RNA id: TU66688


Basic Information

Item Value
RNA id TU66688
length 1772
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G45064
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13842734 ~ 13848641 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGATGAATTTTCACATTCTGGCTTTACAGGAAGAAGCTCCATTATACAAGTTATGGAATGGAACCCCACTTCATCATTCCCAGCTACTTGCTCGTGCTCTAAATTTATCTTCAATTACCTCATCAGTGCTATTATAATAGGGCAGTTCTCTGCCCATGATTCTCTGCGGCGTTGGGGGGTCCCATCTGACCCTGTATGAGTGCTATAAGGCCTGAGAATTGGATTACAGCTTATCCATATCAGCAGCTGTAGCATCCTAACAAAGCCCGTGGGCCCCTGGGCGTATTTCAAGCAAACCAGAATTCACCAAGGACACTCCTGACTGGAAAAGTGGAATGGCAGAGGAATATCCGGTGCCATAATCCTCTTTCCCTCAACACATTACCTGACGCACCAGCACATCGACTGTCTAACACCACCAACAGAAGAGGTAAAACATGCTGTGCAGAAGCGCTACCCAGCCACACAACAAGAGGGTCAGAGTTTATTTCCAGCCTGACAACGGAGCTTCTCTAAATCAGTGTGATCACAACCACACTGACAGGTTGTGACTAACCCATGCAATGCCcctaaatcacacacacgctggGCTCAGACCTCACTGTGTGCTTTTATTCTTAGTGCAGTGAATGAGGGCATTTCAGGTCAAAGCTGCAATACTAAAACTAGAAGCATTGGAATGTAATGTCAATATAtacattgcaaaaaaatcagtaaaatttACTCTACAAAACCGGTATTCTAgcataaaaaatgcagtaacaacgttttatgttttaacataaatttacagttaaataccgtaacaTCATTAAcgatataatgataatattaggTTGAATATAAtacaacctattaaagtactgaaatctgttttgtacatttgaaatacactgataatcACCAAAAGCAGGTgttgatgagaaagtcacatgatgaaccaaaacccgtcacaagcagcttttaaatagtaacatatatatataggaggTGCTctgtgtcattcacacaagcactaaacaccatcatggtgtcgttaatcgcaattaaatgcaataaacattaatctaaCAACATTAGATATAACATGCAATCCTAAGAAACATAACTAAGAAGAAACAGtgattccaaaaaaaacattaaattctaacaatattttaaatgcaatgcagggaattctatGAACttcagtttactttttttttttaaatcagtaatttttttacagtgtacttaaCAGCAAATAACTGCTATTTCAGATGACGTCAGCTTTGGATTGACATACTGTCATGTTGTCCTTATATTACAATCAATATAAGATCAAGCTGTAATCTCAGTGAACACATAATGCTAACTAACCGCATAATATGTATTTTCCTAAGTgtacattaatgttttatacaCATTTCCACACACTCATCCCTGGctaatgacaatattttttaattgttgcacTGAAAcaagtattttctgtaaagctgctaaAACTGACTGTAAAAGGCATATACAAATAAACCTGTCTGaaacatgtttaatgtttttgacttcttatatttattttatttaagtggATTCAGCTAGATGTGATCCAACACATATGGATTATTCTGTGAATATTGAAACTCCGTTAAAGGTCATTCATTTCAGCCTGAGGTCATGGGTCCAGTGTGACATCACGGGCACAGATGATGTAAGGCAGTGCAGTGAGCTCAGAGCCAGTTTCAGTGGGAGGGCAGCTCATTTGGACCAGATAAAGGTGCTTTGTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66677 lncRNA downstream 5196 13837305 ~ 13837538 (-) True G45058
XR_006251212.1 lncRNA downstream 7143 13823672 ~ 13835591 (-) False LOC122347350
XR_006251213.1 lncRNA downstream 7143 13823672 ~ 13835591 (-) False LOC122347350
XR_006251214.1 lncRNA downstream 7143 13823672 ~ 13835591 (-) True LOC122347350
TU66661 lncRNA downstream 120203 13718202 ~ 13722531 (-) False pex5la
TU66892 lncRNA upstream 5256 13853897 ~ 13858117 (-) True G45195
TU66894 lncRNA upstream 11609 13860250 ~ 13860818 (-) True G45197
TU66895 lncRNA upstream 12594 13861235 ~ 13861445 (-) True G45198
TU66908 lncRNA upstream 63043 13911684 ~ 13972094 (-) False G45206
TU66907 lncRNA upstream 104838 13953479 ~ 13972094 (-) False G45206
XM_043241824.1 mRNA downstream 56831 13722309 ~ 13785903 (-) False pex5la
XM_043241826.1 mRNA downstream 56833 13722309 ~ 13785901 (-) False pex5la
XM_043241825.1 mRNA downstream 56833 13722309 ~ 13785901 (-) False pex5la
XM_043241823.1 mRNA downstream 56833 13722309 ~ 13785901 (-) True pex5la
XM_043241827.1 mRNA downstream 56834 13722309 ~ 13785900 (-) False pex5la
XM_043242271.1 mRNA upstream 137406 13986047 ~ 14040163 (-) True lrrc7
XM_043241204.1 mRNA upstream 277933 14126574 ~ 14128317 (-) True cldn33b
XM_043242836.1 mRNA upstream 331231 14179872 ~ 14190329 (-) True lurap1
XM_043242907.1 mRNA upstream 349051 14197692 ~ 14200743 (-) True ttc4
XM_043241459.1 mRNA upstream 436856 14285497 ~ 14402960 (-) True pde4ba
TU66636 other downstream 161460 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 374795 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 375169 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 375508 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 375677 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU66983 other upstream 311834 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1480326 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1755269 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2210327 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 2211252 16059893 ~ 16060466 (-) True G45731

Expression Profile