RNA id: XR_006251242.1


Basic Information

Item Value
RNA id XR_006251242.1
length 557
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC122347615
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14129347 ~ 14131078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagATGTAGCATCTCGCTCAGCACGATCTGGATCTCATAGACTGATTAACACGATCTGTGCAGAGTTCCCGAGAATCAGTGTCCTATCACTTGAGTTCCTAATGGGAGGATCCATCTGCCTCTGTGGAGAAAAGGAGAGAAGTGGTCCTGAAATGCCTAATCGAGTACATGGGGAGAGACAGGAAGACCTCATCAGTGTCCTCCACAGTCGTGATGTGCACGCCGAGCTTGGCGGTTTCCCTTCTCAAAGTTAACATGTGCCATCACCCCGACACGATTGGGATTATCACAGAGGGACAGCCCGTGGTCAGAGGTGTTCCAAACCTGTCCAAAGCATGCTGCCTCCTGTTTGGACTTAACCTAGGCCCTTGACCTCAAGCATCCTCAAAACTGGTCTGTACGTTTGAGATATATCAGAGGCTCTTTGTGGGACTGGACCCCATGCGTCCTAAACTATCATCCAAGTATGCAAATTTGggagttcttaaaaataatagttgttgaatatatagaaaaaaatgtaaaaaaattctcATTGCAGTTCCAGTGTGATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66727 lncRNA upstream 1003 14016435 ~ 14128344 (+) True G45084
TU66717 lncRNA upstream 132381 13992745 ~ 13996966 (+) True G45075
TU66694 lncRNA upstream 268738 13860255 ~ 13860609 (+) True G45070
TU66675 lncRNA upstream 292528 13836607 ~ 13836819 (+) True G45056
TU66600 lncRNA upstream 467250 13661812 ~ 13662097 (+) True G44998
TU66775 lncRNA downstream 83133 14214211 ~ 14215282 (+) True G45112
TU66744 lncRNA downstream 132523 14263601 ~ 14286676 (+) False G45095
TU66747 lncRNA downstream 152779 14283857 ~ 14286676 (+) True G45095
TU66787 lncRNA downstream 166553 14297631 ~ 14298231 (+) True G45119
TU66785 lncRNA downstream 166691 14297769 ~ 14298002 (+) False G45119
XM_043242270.1 mRNA upstream 8165 14117791 ~ 14121182 (+) True cldn34a
XM_043242269.1 mRNA upstream 8165 14117792 ~ 14121182 (+) False cldn34a
XM_043242259.1 mRNA upstream 12825 14079628 ~ 14116522 (+) True shroom2a
XM_043242260.1 mRNA upstream 12825 14079628 ~ 14116522 (+) False shroom2a
XM_043242261.1 mRNA upstream 12825 14079628 ~ 14116522 (+) False shroom2a
XM_043242440.1 mRNA downstream 2263 14133341 ~ 14170086 (+) True wwc3
XM_043242441.1 mRNA downstream 2263 14133341 ~ 14170086 (+) False wwc3
XM_043242906.1 mRNA downstream 61507 14192585 ~ 14197319 (+) True ttc22
XM_043240965.1 mRNA downstream 364389 14495467 ~ 14523316 (+) True jak1
XM_043242955.1 mRNA downstream 577430 14708508 ~ 14712351 (+) True LOC122347575
unassigned_transcript_1264 other upstream 48343 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 150342 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 719435 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 1019981 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 1047228 13080610 ~ 13082119 (+) False smx5
TU67192 other downstream 1105133 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1227783 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1433903 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 3055630 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 3864113 17995191 ~ 17996717 (+) True G46022

Expression Profile