RNA id: TU66775


Basic Information

Item Value
RNA id TU66775
length 1037
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G45112
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14214211 ~ 14215282 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTGCGCTcgagttaaaaaaattatatctgaaatcaatttaaaaattatacctCAGCATTATACTGTACACAGCTCACCCAACTACACAGATAACAAAAAGTCCAAAACTTCAAGGATCCTAAATTATGATACCATTCAAAAGTCTATTCATATACAGTGtaatgtttcgtttttttttttatatatatatacaacaaatcgtgaataaataaaaatagaatgatGTACTCTGATGTCTAACACACGTTCCTTCGGGAACAACAGAAAGGCTatttaacaatacaaaaaaaccaaacggccttcgatatatatatatatatatatatattacgactTTTCCGTTCTTTTGTGAGTCTATTGCAAGCAGGAGTCTATTTTTCAAGCGGCGCTGCGTCTAAAAACGGATTCGACAAAATTTGCATCCTTGTCCAATTAACGCACCTGACTGCGCTGTGTGAATTAAAAGGAGATATTCCTGaatacgctttttttttttttttaaaataagcttgAGCAACACCAAAATCTGATGCAGACCTCATACTACATGCAACAGTATAGCGCCATCTTGTGGCGGAGGCTCATTTCCTCTTTTTGACCGTACTAATTTGCTACCTTGCTCGAAAATGTGATACTTTTGACAAACTGAATGCATAgagtaataaaaacatcacatcagTATCGCCTCCGAGAGAAGGATACAGAGATTTCAGGTTCAGGTAGGCACAGCCAATAACACGGCGGACAGAAATAGAGGCTAAACCTTACGAACAAACCCAGGCCGCAATACAGATGTTGCAAAGTGAGTACGGTTCACAAATATAAGAAGTACACCCTAAAACGGTCCACATTTTATAATGCAACTCATATAATactgctggagtgtgtgtgtgtgtgaggtccaCCTGTATTGTACATCTACAAAGGTTTATCCATAAGGTCAGGTAGGGGTCATGTCCTGTGTTTTAAATACTCAGAATTGGTCCAAAATATGCAGACTGGCGTCAGGTCGTTTAGTTGTCCGCCATGTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251242.1 lncRNA upstream 83133 14129347 ~ 14131078 (+) True LOC122347615
TU66741 lncRNA upstream 83213 14130488 ~ 14130998 (+) False LOC122347615
TU66727 lncRNA upstream 85867 14016435 ~ 14128344 (+) True G45084
TU66717 lncRNA upstream 217245 13992745 ~ 13996966 (+) True G45075
TU66694 lncRNA upstream 353602 13860255 ~ 13860609 (+) True G45070
TU66744 lncRNA downstream 48319 14263601 ~ 14286676 (+) False G45095
TU66747 lncRNA downstream 68575 14283857 ~ 14286676 (+) True G45095
TU66787 lncRNA downstream 82349 14297631 ~ 14298231 (+) True G45119
TU66785 lncRNA downstream 82487 14297769 ~ 14298002 (+) False G45119
TU66789 lncRNA downstream 103924 14319206 ~ 14320343 (+) True G45121
XM_043242906.1 mRNA upstream 16892 14192585 ~ 14197319 (+) True ttc22
XM_043242440.1 mRNA upstream 44125 14133341 ~ 14170086 (+) True wwc3
XM_043242441.1 mRNA upstream 44125 14133341 ~ 14170086 (+) False wwc3
XM_043242270.1 mRNA upstream 93029 14117791 ~ 14121182 (+) True cldn34a
XM_043242269.1 mRNA upstream 93029 14117792 ~ 14121182 (+) False cldn34a
XM_043240965.1 mRNA downstream 280185 14495467 ~ 14523316 (+) True jak1
XM_043242955.1 mRNA downstream 493226 14708508 ~ 14712351 (+) True LOC122347575
XM_043242741.1 mRNA downstream 565644 14780926 ~ 14790192 (+) False LOC122347452
XM_043242740.1 mRNA downstream 565644 14780926 ~ 14789313 (+) True LOC122347452
XM_043242742.1 mRNA downstream 565644 14780926 ~ 14789313 (+) False LOC122347452
unassigned_transcript_1264 other upstream 133207 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 235206 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 804299 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 1104845 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 1132092 13080610 ~ 13082119 (+) False smx5
TU67192 other downstream 1020929 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1143579 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1349699 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 2971426 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 3779909 17995191 ~ 17996717 (+) True G46022

Expression Profile