RNA id: TU66983



Basic Information


Item Value
RNA id TU66983
length 550
RNA type TUCP
GC content 0.58
exon number 2
gene id G45257
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14160475 ~ 14193166 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AATCAAGTGCACGGTTGTACAACATCAGCGCAGATGTCAGTCTCTCCTGTAAATCTTCTTCCCTCTCCAGCTCGACATCGTGAGGATGTGCGTAAGCCTGTTCAGCCAAGCACCGTGCTACCCTGAGCCTGCATTCTGTCTGGTTCTCCCCCATCTCTGGGCCCATAAGGGCAGCCACGCGCTCCACGCACTCCCCCTCCTCCAGCTCACGACCCAGGCGTTCATAGACGTAACCCAGGTTGGCCCAGGCGTTGAGGTTTTCTGGATCCTCTTGGCAGATGCTGCGGAAGGCCTCCTCTGCTGTCTCCAGTTCGTCTACATGAAAGGCCAGCAGGCCCAGCATATTGCGCACAGCGTACTGGAGTCTCCCCGTCTCCGCTTCGAGCTCAGCCCTGAGGCTCTCGCGCTTCAGCTGGGTGTCCCGGTGCCGAAGGGTGACTGGTCCGTTGGGTTCACCGTTCAGATTGAGCTCCAAATGAAAGTGGCCAGGGATGTAGGCCATCCCCTCAATCAGAGTCTCGATGTCCTCCTCTGTctctctctctctctg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU66938 lncRNA downstream 178590 13981229 ~ 13981885 (-) True G45225
TU66908 lncRNA downstream 188381 13911684 ~ 13972094 (-) False G45206
TU66907 lncRNA downstream 188381 13953479 ~ 13972094 (-) False G45206
TU66905 lncRNA downstream 188381 13968313 ~ 13972094 (-) True G45206
TU66895 lncRNA downstream 299030 13861235 ~ 13861445 (-) True G45198
TU67006 lncRNA upstream 18200 14211366 ~ 14212986 (-) True G45270
TU67008 lncRNA upstream 21472 14214638 ~ 14216276 (-) True G45271
XR_006251154.1 lncRNA upstream 70623 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA upstream 70623 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA upstream 70701 14263867 ~ 14279026 (-) False LOC122346673
XM_043241204.1 mRNA downstream 32158 14126574 ~ 14128317 (-) True cldn33b
XM_043242271.1 mRNA downstream 120312 13986047 ~ 14040163 (-) True lrrc7
XM_043241824.1 mRNA downstream 374572 13722309 ~ 13785903 (-) False pex5la
XM_043241826.1 mRNA downstream 374574 13722309 ~ 13785901 (-) False pex5la
XM_043241825.1 mRNA downstream 374574 13722309 ~ 13785901 (-) False pex5la
XM_043242907.1 mRNA upstream 4526 14197692 ~ 14200743 (-) True ttc4
XM_043241459.1 mRNA upstream 92331 14285497 ~ 14402960 (-) True pde4ba
XM_043241460.1 mRNA upstream 92331 14285497 ~ 14363385 (-) False pde4ba
XM_043241461.1 mRNA upstream 92331 14285497 ~ 14335649 (-) False pde4ba
XM_043241462.1 mRNA upstream 92331 14285497 ~ 14328201 (-) False pde4ba
TU66636 other downstream 479201 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 692536 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 692910 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 693249 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 693418 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU67455 other upstream 1135801 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1410744 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1865802 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1866727 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 2168034 16361200 ~ 16364020 (-) False fam183a

Expression Profile


TU66983 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU66983 Expression in each Bioproject

Bar chart with 2 bars.
TU66983 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.