RNA id: TU67149


Basic Information

Item Value
RNA id TU67149
length 2792
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G45364
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15010246 ~ 15086529 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgtaagaggtagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaggacctggCGCGTTTGGAGTACCATACATGTCCCGCATGCAGGATTGGTGGGGTAATGCAGACTTGAGCAATGCTCGAGGGCCCTCAAAAGTTCACAAGTCCCCTCAACATCAGTTCACGACCGAGAAAAGTCAAGGGTGTATTGCTGTCTCCCGTTCTCGCTTGTAAGCGTTTTAATATTAGCGTCGTTCCTTGCAAAGTCCCTTCACAGGCTGAAGTTCCGTTTCCCGCGTGTTCTCATCGCCATTAAGACTCGTCGATCcgttaagacaaaaaaaaagaatcaaatgataaaaatgaaataaattaagaaagCGGCTGTGTGTCTTTAAACACGTCGGACATTGCAGTTAGCGTGTAactaaagagagaaagaaaaaaaccccactaaTTTACAGAATCCAAAACTGATGGGTCTTTGGAGGCTATGCGTGATCCCATGTTTAGAGCGGAGGTGTTATGAAGTAGAAGGGTCCGTGCAGTATCTGTGGAAGATAATCCTAACATTACACTAACCTTAAGACTTTTATGGTACAGTAATATATGTACACAAATAATGAGTGAAGACTTTAAATATGTCGCTGTAATGTTAgactacactcttaaaaataaaggttcttcagTGTTTCTCTGTAGTGCTCCAAAGTAAAGCAAAGGACTTGACTTGCTTGTCAATAATAATTTTGGCGGTAAAAgtgggtaaaataaaaaagtgctgGATGTTACATTACGGATTCTCTGGATTTGCATATTAGGTTCTTTAAAGCTACATAGAGGTTTCTTTGGAGTCCTTAAAAGCGAAGTATTTATTTGTGGAACTTTTGAAGGTTCTCCTGTCAGACCTTTATTTTCAAGAGTGCACGTTCTAAAGTGGACACTGGGTATTTAAGATAAGAACTGCAAATAAAATTCACActgaaaatcataaaaattaagttttttaaaaaaacgaatacGTTGGTgcgaaaaaaaagtctttaacaAGAATCACTCTCACATGAAGAATTCCGTGGAAGTGGTTTTGCCGTGAGTGCCGTTGGACGGGTCCCGAGTGTTGCCGCCTCCGTTGCCGCCGCCGTTAAAGGTTCGGCTCGCGAGCTTCTCGTACTTCTCCTTGTACAGGTCCCGCTCTTTGATCAGACGCGCCACGTCTTGCTTGAGTTGCTCCACCTGGCTCTGAAGCGTGCACTTTTCGCTCTCGAGCATGTGGCGCTGCTGCACGCGCTTGTAGCGGCACGACTGAGCGTAGCCGCGGTTCTTCAGGGTTCGCCGTTTCTGCTTGAGACGGATCACCTCTTCTTTGCTGAAGCCTCTTAGCTGCCGGTTGAGCTCGCGCACCGTCATGCTCACCAGCTGCTCGTCCGAGAAGCGGTCCTCGAGGCGCGCGTGCGCGTGGTGGCCgtggtggtgatggtggtggtggtgcaCCGGGTGGTGGTGGCCGTTCGTGGCCGTCGAGAGGTCTTCTCCGACGTACTGCTGACCGCGGTATCCCTCGTAgggctggtggtggtggtggtggtggtgcgCGTTGCCGATTAGCGCTTCCACCGCGTCCTCGGGCGTCAGGTTGAGGGCCTCCGGGCTGATGTGATGCTGGTAGTTGGGAATCCAGTAGAGATCTTCCAGCTGCGGCTTGCCCGAGGAGccttggttgttgttgttgttgttgttgccgcTGTTGTTGTTGCTGACGCCATTTCCGAGGTTCTGCCCGGGCTGCGATCCGGGACTGGGGGCACAGAAACTGGGCGAGGAAGGCACCGAGGAGCAGGGTGTGCTGATTGGAGTGGAGGATAGCGAGCCCGGGGGCAGGCGGTGGCAATAGCGGTCGGCCTCCGGAGGCTCTTTCTTGACTTCAAACTTCATGAGGTCGAAGTCGTTGACATATTCAATAGCCAGGGGGCTGTTGGGCAAATCTGCGCTCATGGCGAGATCGGTGGCCATGTCAGTCCATGCGACGACACCTACCCTAACAGCCAAAGCGACACGCGTGGGTTTCGCTGGGATTACGATGAAAACGACTGAAGACGAGTGCCCAGGGTTTAATACCTAAGCACGAGCTTCTATTTATAGTGCAGCGAGATATACGTATGCCcatgcatgtaaatgtacttATACACCTGCCAGTTTGCCTCTTGTTGACAACTTATCCCAGGTCAAATTCACGCGTTAATATCACTGGCCAGGGCGGCAGAAACTCGAGACTCGTGAATTCAAAACCACCAACCTGACTCGTCCTCGCTTCAGCGCGTTAAAGGCGACACGCGGTTTCAGACAAACCGTCCTGCGAGTCAACAGAGATTTCAAATATCCTTCTTCGCCTCCCGAGTCCCGTCTAACCGGAGGCAGCAAAGTTTAAGCTTTCGTGCGAAGAAAGCGAGAACTTTCCTCACGTGTCGCAAGAAGAGTCCTTCGCACAACAAACGCGCGCCGGTCAAGTTCAGGAAACGACAGACTTTACCTCGAAGTCCAAAGGaatgatgctgctgctgcttcttcttctgctgcttTTTACACGGAGACCGCAACAACGTGCTCGACAAATCTCAGCGTAACGTTAAGTTCCTCTGGTGGGACGCTCCGACGCAGCCCGACGAAGAGTGCGGGATTCCGGCTACTAAATTCACCTCCCTCCGCTTTCGCTTTTAAAGTTACATGGGCTGCCGTCACCGTCGCTTTCCGTTTACGGCTAGAGCTTATTTTTGCACCGTTGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67090 lncRNA upstream 196567 14805305 ~ 14813679 (+) False G45333
TU67092 lncRNA upstream 197689 14808335 ~ 14812557 (+) True G45333
TU67064 lncRNA upstream 242264 14766645 ~ 14767982 (+) True G45312
TU66876 lncRNA upstream 373565 14586502 ~ 14636681 (+) True G45182
XR_006251140.1 lncRNA upstream 516213 14491806 ~ 14494033 (+) True LOC122346521
TU67160 lncRNA downstream 13308 15099837 ~ 15114651 (+) True G45371
TU67161 lncRNA downstream 13308 15099837 ~ 15113300 (+) False G45371
XR_006251211.1 lncRNA downstream 144292 15230821 ~ 15231746 (+) True LOC122347325
XR_006251210.1 lncRNA downstream 145295 15231824 ~ 15233054 (+) True LOC122347324
TU67200 lncRNA downstream 189086 15275615 ~ 15344414 (+) True G45400
XM_043241926.1 mRNA upstream 2177 14964912 ~ 15008069 (+) False kank4
XM_043241922.1 mRNA upstream 2177 14964913 ~ 15008069 (+) False kank4
XM_043241924.1 mRNA upstream 2177 14965626 ~ 15008069 (+) False kank4
XM_043241923.1 mRNA upstream 2177 14987183 ~ 15008069 (+) True kank4
XM_043241925.1 mRNA upstream 2177 14988692 ~ 15008069 (+) False kank4
XM_043241227.1 mRNA downstream 61601 15148130 ~ 15153403 (+) False cyldl
XM_043241226.1 mRNA downstream 61602 15148131 ~ 15154622 (+) False cyldl
XM_043241225.1 mRNA downstream 61603 15148132 ~ 15154622 (+) True cyldl
XM_043242089.1 mRNA downstream 76464 15162993 ~ 15184666 (+) True ghrhrb
XM_043242090.1 mRNA downstream 76464 15162993 ~ 15184666 (+) False ghrhrb
unassigned_transcript_1264 other upstream 929242 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 1031241 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 1600334 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 1900880 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 1928127 13080610 ~ 13082119 (+) False smx5
TU67192 other downstream 149682 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 272332 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 478452 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 2100179 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 2908662 17995191 ~ 17996717 (+) True G46022

Expression Profile