RNA id: XM_043240997.1


Basic Information

Item Value
RNA id XM_043240997.1
length 2760
RNA type mRNA
GC content 0.46
exon number 26
gene id pomgnt1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15236165 ~ 15244280 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgaaaaaagagcGTGCGGCTTCGTCCTGCAATCTGGCTTCACACTACTCATTACCTGCATATGGCCAAGCGCTACTAGACCCGACCTAAACTAAATTACAGTTATATTTTCTGGAGAGTCGGGACGTCGTTTCCGTGCAACATAAAATGCTGCTGAGATGAAGAAGACGTGATCCCAGGCGTTGTCGGATGCAGGCAGGTCTTGTGATCGGGAGCAGCGGGCAGGACTGCAGGAATGGACACCTGGACACCCAACCCGAGAGCCAAACCCTTCATCCCCCGCCAGCAGCGCAGCCTCTACCTCACCTGGAAATACAGACTcaccaacaaaagagcagtgCGGCGGATCTGCCAGGCCAGTGCTGTCCTCTTTCTACTGATCACAGTGATTGTCAATATCAAACTCATTCTTGACACGAGGAGAGTTGCCAGTGAGGACGATGCTGTTCAAGAGTATGATGACGTCCTGCCTAACATGGAAACCCCGCGCAGACCAGCGAGTGGGAGAAAGGTTTTGGATATCGAGGTGTATTCTAGTCGATCTAAGGTTTATGTAGCAGTGGATGGCACCACTGTTCTGGAAGATGAGATGAGGGAGCAGGGCCGAGGCGTGCATGTTATAGTTTTAAATCAGGCAACTGGTCATGTCATGGCCAAAAGAGTGTTCGATACTTATTCTCCCCATGAGGATGAAGCCATGATCCTCTTCCTCAACATGGTCACACGTGGAAGAATCCTCATCTTTACTATTAAGGATGAGGCTTTCCACTTGAAGGATGCAGCAAAGAATCTTCTGAAAGGTTTGGGGAGTCAGGTAGCTGTCACTTTAGGTTGGAGAGATATGTGGACTCTGGTTGTAAGAAGGGAGGTGTATGGGGAGAAGCACTCCAAGTCTCCTGCTCTGTCCACATGGGGTGATCCTGTGCTGCTGAAGACTGAGGTCCAGCTGACAGCTTCTGAAGAGGCAGAGTGCCATTGGGCAGACACCGAGCTGACGCGGAGAAAACTCTTTTGCAGTAAAGTGGAAGGATATGGAAGCATTTGTAGTTGCAAAGACCGCCCCATAGAGTTTAACCCAGACCCACTGCCTAGCAACAAAGTCTACAACGTCCCAGTAGCAGTTATAGCTGGAAATAGACCAAACTATCTCTACAGAATGCTGCGCTCTCTTCTTATATCCCATGGTGTCAATCCACAGATGATCACTGTTTTCATCGATGGCTACTATGAGGAACCcatggatgtggtggatctctTCGGTCTTAAAGGAGTTCAACATACCCCTATCAGTATTAAGAATGCTAGAGTGTCACAGCACTACAAAGCCAGCTTGACTGCAACCTTCAGTCTGCACccaGATGCAGATTTTGCCATTGTCTTGGAGGAAGACCTGGATATTTCCATAGATTTTTTCAGCTTTCTCAGCCAGACTATCCATTTGTTGCGTGAGGATGACAGTCTGTACTGTATCTCAGCCTGGAATGACCAAGGCTATGAGCACACCGCAGAGGACCCGTCTCTGTTGTACAGAGTGGAGAGTATGCCCGGCCTTGGCTGGGTGCTTAAAAAAAGCCTTTACAAGGATGAACTAGAGCCCAAATGGCCAACTCCTGAGAAGCTATGGGACTGGGACATGTGGATGCGGATGCCAGAACAGAGGAAGGGGAGAGAATGTGTCATTCCTGATGTCTCCCGCTCTTATCACTTTGGCATCATTGGGTTAAATATGAATGGTTACTTCCATgaagtttactttaaaaagcacaaGTTCAACACTATTCCGAATGTTCAGATGAGAAATGTAGATAGCTTGAAGAAAGATGCATATGAGATCGAAATCCAAAACCTGCTACGTGAGGCTGAGGTCCTGGACCACAGTAAAAACCCATGCGAAGACTCATTTATCCCAGACACAGAGGGAAAGACCTTTGTAATGTTCATTAAAATGGAGCAAGAGACGGATACAAACACTTGGACGGAACTGGCGAAGTGCCTGCATGTATGGGACCTGGATGTACGAGGTTATCACAAAGGACTCTGGAGGCTCTTCAGAAAGAAGAACCACGTATTAGTGGTGGCTGTTCCAATCTCACCATACTCTGTTAAGAAGCCCAATAACGTCACTCCCATTCACTTGGAGCCAGCACCTAAAGAGGAGGGACCTCCTGTGGAACAGATTTAGAGCAGTTTTAATCCCACCCAAAGGGCCTTTCCTAACCACTAACAGACAAGGCCCATGTCATGCGGATAATGGGCCTTGTGTTCTTCAGGCCGTTGCAAGACAAAGGGGATAGGATGAACCTGACTGAACCGTCCTGTGCTGGTGCCCTCTAGGAACTGCAGGCTTTTTAAACTAGAATGATAATAGTGTGGATTTCTTAAATGGCGTGTGGAGTGACCTTCTTGTTTTGTTGGTATGCATTTTACAGTGGGAGCTTCTCCTGGGGTCGTGAAATTTCATATGTGTTTATGCTGGAAGGTTTGACATTAGAAACGAATTGATGGATGTTTTAAAGTATTACTGGTACTATGATAGAAACCAGTGCTGGTTTTAGTTACTGAATTGTGACAACAGTTAATGTCAAACCAGGACACTCCGAAAAAGGGATTAGGAGGGTACAGAAGACataagatactttttttttttttaacactactGAGTGCTTTGGGCCGTCCTGCACATGCGTTTTAACTTAtgtctatttattttgtcaatattaaGATAACtaggtttatttttacttaatggATTCACTTTTA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09666 POMGNT1; beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251210.1 lncRNA upstream 3111 15231824 ~ 15233054 (+) True LOC122347324
XR_006251211.1 lncRNA upstream 4419 15230821 ~ 15231746 (+) True LOC122347325
TU67160 lncRNA upstream 121514 15099837 ~ 15114651 (+) True G45371
TU67161 lncRNA upstream 122865 15099837 ~ 15113300 (+) False G45371
TU67143 lncRNA upstream 149636 15044234 ~ 15086529 (+) False G45364
TU67200 lncRNA downstream 31335 15275615 ~ 15344414 (+) True G45400
XR_006251186.1 lncRNA downstream 217682 15461962 ~ 15462420 (+) True LOC122346981
TU67246 lncRNA downstream 242094 15486374 ~ 15487892 (+) True G45421
TU67247 lncRNA downstream 242094 15486374 ~ 15487892 (+) False G45421
TU67276 lncRNA downstream 266460 15510740 ~ 15577035 (+) False G45447
XM_043242089.1 mRNA upstream 51499 15162993 ~ 15184666 (+) True ghrhrb
XM_043242090.1 mRNA upstream 51499 15162993 ~ 15184666 (+) False ghrhrb
XM_043242091.1 mRNA upstream 51499 15162993 ~ 15184666 (+) False ghrhrb
XM_043241226.1 mRNA upstream 81543 15148131 ~ 15154622 (+) False cyldl
XM_043241225.1 mRNA upstream 81543 15148132 ~ 15154622 (+) True cyldl
XM_043241047.1 mRNA downstream 89750 15334030 ~ 15340136 (+) True LOC122346435
XM_043241257.1 mRNA downstream 401740 15646020 ~ 15657188 (+) False pfkfb4b
XM_043241255.1 mRNA downstream 405595 15649875 ~ 15657188 (+) True pfkfb4b
XM_043242473.1 mRNA downstream 439286 15683566 ~ 15691034 (+) True LOC122347276
XM_043242828.1 mRNA downstream 451346 15695626 ~ 15697839 (+) True LOC122347482
unassigned_transcript_1264 other upstream 1155161 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 1257160 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 1826253 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 2126799 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 2154046 13080610 ~ 13082119 (+) False smx5
TU67233 other downstream 114581 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 320701 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 1942428 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 2750911 17995191 ~ 17996717 (+) True G46022
XR_006251243.1 other downstream 2912375 18156655 ~ 18164954 (+) False tubgcp5

Expression Profile