RNA id: TU67316


Basic Information

Item Value
RNA id TU67316
length 504
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G45470
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15637946 ~ 15638524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGTATTTATTAATGacccttatttttatttttagggggGAAGTGATAAATGGTGGTTTTGGATTGGTTCTGGATGGTTCTGAAGAAGCAGGGCAAAAAGCTAAACTAATGCTGAACTGGGATGTCTCTAATGGGGTGGCACGGAGATGCTGGTCTGGCAATGCTAATGCTTATGAGACAATTCAACGTACCATGGAGAACCAGCACCAGCTGAGAGTCACAATGCCCAACCCAGTACAGGACGATCAAATCCTGGACCGTGCACTGCATAAAAGACtgaacgatttttttttttttttgtttttaaatatgacattattcattaaaagcaACAGAATTAGTGTTtattaacacaatttttttcataccagaaaaaattgtaaatgtaaagtaataaaaataaaataaaaaataaaaatgtacacctgcatttgtattttataaatgaaaacaaccgttttatttcagtgaattgacttgaataaatatttgaggaaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67291 lncRNA upstream 54540 15580262 ~ 15583406 (+) True G45456
TU67276 lncRNA upstream 60911 15510740 ~ 15577035 (+) False G45447
TU67274 lncRNA upstream 60911 15568118 ~ 15577035 (+) True G45447
TU67246 lncRNA upstream 150054 15486374 ~ 15487892 (+) True G45421
TU67247 lncRNA upstream 150054 15486374 ~ 15487892 (+) False G45421
TU67295 lncRNA downstream 5510 15644034 ~ 15645126 (+) True G45459
XR_006251141.1 lncRNA downstream 165764 15804288 ~ 15805565 (+) True LOC122346530
TU67573 lncRNA downstream 250233 15888757 ~ 16117279 (+) True G45635
TU67581 lncRNA downstream 513658 16152182 ~ 16155761 (+) True G45643
TU67634 lncRNA downstream 657007 16295531 ~ 16298954 (+) True G45684
XM_043241047.1 mRNA upstream 297810 15334030 ~ 15340136 (+) True LOC122346435
XM_043240997.1 mRNA upstream 393666 15236165 ~ 15244280 (+) True pomgnt1
XM_043242089.1 mRNA upstream 453280 15162993 ~ 15184666 (+) True ghrhrb
XM_043241257.1 mRNA downstream 7496 15646020 ~ 15657188 (+) False pfkfb4b
XM_043241255.1 mRNA downstream 11351 15649875 ~ 15657188 (+) True pfkfb4b
XM_043242473.1 mRNA downstream 45042 15683566 ~ 15691034 (+) True LOC122347276
XM_043242828.1 mRNA downstream 57102 15695626 ~ 15697839 (+) True LOC122347482
XM_043240995.1 mRNA downstream 107550 15746074 ~ 15753735 (+) True LOC122346397
TU67277 other upstream 71278 15564981 ~ 15566668 (+) True G45448
TU67233 other upstream 178560 15358861 ~ 15459386 (+) True G45419
TU67192 other upstream 399746 15236211 ~ 15238200 (+) False pomgnt1
unassigned_transcript_1264 other upstream 1556942 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 1658941 13972173 ~ 13979005 (+) False meltf
TU67943 other downstream 1548184 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 2356667 17995191 ~ 17996717 (+) True G46022
XR_006251243.1 other downstream 2518131 18156655 ~ 18164954 (+) False tubgcp5
TU68431 other downstream 2938754 18577278 ~ 18588447 (+) False atp10a
unassigned_transcript_1265 other downstream 3513578 19152102 ~ 19152173 (+) True trnaq-uug_14

Expression Profile