RNA id: TU67419


Basic Information

Item Value
RNA id TU67419
length 1501
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G45544
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15233267 ~ 15745536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTTCTCTAGAAAAGACCCAGCGGTAAAGAATAACATGGGGGACCTCTGTCAGCTTCTGGTTACTTAGtgcttttttcCTCCCTGTTGACACACGGAACATTTCAGGGCACGGATCGGAATGAATCAGTCAAAGATTCTCACTCAGACGCTGCTCTAGAGGTCCGGCCTGACAGCAGACAACACTTCAGGGGGGGAAATTTCACCCTTCGCTGCTCTGTTAAAGTTATTAATTCAACGAGCTGGATTCTGAGCGGGCTTCGGGGAGCTAAAAAAAGATCTGGATGCTTGCAGTTAAATGGCACCGAATCTACAGACAGGCCTCAAGAATGTCATTTCATTGACATTGACCATAATAACAATGGATTGTACTGGTGTGAGAGTCCtgctgaaaacaagacaagtAACTCCATCAGTATCACCGTGAGCTATCGCTCAAAAGAcgaaaacacatttacagGGACTGTGGCCTGGGTGTCAGGGCTGTGTATCATATTGATTCTTCTGGTGCTTCTTCCTATTCTCTGGCTCTTGTTTCCTGGTTTCAGGGAGAAATTGCATGTGTGTCCAAATAGGGCATTCAAGAGGGAAAGAGTTCAAGAGGAAATGCCTAAAACCAAGCAGGACGTGACTGAAATCCAGTGGATCTTCCCTGGATGGAGATGGACAATCTGTTGGACGCGCACCAAAATCGTGGCAGCTGAAGTGTCTACATTTCAAATGTGGATGCTATCAGATACACATGCTATTTCTGAAGAGAAAACAGACACTGTGCTTTAAAGTGAGTCACAGGTAATATGACGGATGAATAAAGAGGCCCATCTTGATATTTACAGCTTATGGAAGTGTTTTCACACTGAATAATATGTTACCAACTTTAGATAAGAGGTCAAAGGTCCGTAAGGAATAATTATACCTTTTAATCACAAAATGGCACTGAATTGTTATTTCTGTGTGACTCATTTGCATATAGAGTAAAAGCTTGCAtgaacttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaattatGGTTACAGTGCAGTGTTGActtataacatttacatttacacatttagcaGAAACTTTTACTCAAAGTGACATACAAATGAGGAGTGATCAAAATCTACAAAAGAGCACTGGTACACAAGTGCTATAACAATTAGTTACCCTTACATGgttctttaaattatataatacatttttcttttcattttttaatacatttatataataaatcaaaagaaaacatatacataaataatacagcgAACTACACAGCAAAATTCAAAGTGTTAAATTTACACTAGTAGTGTGGAAATCAACACTTTTTCGGGTTTATATAGGTCCACACTGAATCGAgttaattttacactttaaaaagtgtacatttttcaacTCATTTAGAGTGTTATAAAAACACTGTGAGTGTTCACATTTAACACCAttggtgtgtttttcttttagtgaAAGTTTCCATTTACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67416 lncRNA downstream 12242 15185152 ~ 15221025 (-) False G45543
TU67413 lncRNA downstream 19635 15185152 ~ 15213632 (-) True G45543
TU67394 lncRNA downstream 78651 15102690 ~ 15154616 (-) True G45532
TU67118 lncRNA downstream 327559 14905502 ~ 14905708 (-) True G45355
XR_006251130.1 lncRNA downstream 577236 14651716 ~ 14656031 (-) False LOC122346442
TU67460 lncRNA upstream 83930 15319385 ~ 15320034 (-) True G45560
TU67480 lncRNA upstream 247451 15482906 ~ 15484967 (-) True G45579
TU67453 lncRNA upstream 251208 15486663 ~ 15489101 (-) True G45554
TU67483 lncRNA upstream 253663 15489118 ~ 15490685 (-) True insl5a
TU67490 lncRNA upstream 299931 15535386 ~ 15657179 (-) False LOC122346545
XM_043243036.1 mRNA downstream 21286 15187162 ~ 15211981 (-) True adcyap1r1b
XM_043243037.1 mRNA downstream 21760 15187162 ~ 15211507 (-) False adcyap1r1b
XM_043241228.1 mRNA downstream 85182 15144790 ~ 15148085 (-) True LOC122346528
XM_043241713.1 mRNA downstream 112654 15092139 ~ 15120613 (-) True LOC122346854
XM_043241229.1 mRNA downstream 146701 15082218 ~ 15086566 (-) True mafaa
XM_043241714.1 mRNA upstream 10974 15246429 ~ 15256160 (-) True LOC122346855
XM_043242964.1 mRNA upstream 92128 15327583 ~ 15330851 (-) True LOC122347580
XM_043241046.1 mRNA upstream 95781 15331236 ~ 15333933 (-) True LOC122346434
XM_043242571.1 mRNA upstream 109474 15344929 ~ 15394123 (-) True sgip1a
XM_043242507.1 mRNA upstream 253706 15489161 ~ 15490679 (-) False insl5a
TU66983 other downstream 1040101 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1551993 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1765328 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1765702 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1766041 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 93512 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 368455 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 823513 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 824438 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1125745 16361200 ~ 16364020 (-) False fam183a

Expression Profile