RNA id: TU67453


Basic Information

Item Value
RNA id TU67453
length 2401
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G45554
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15486663 ~ 15489101 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTTATTCTCCCCCTCCCCAAACTGTTATTAACCCAatctaattatattaaatgactctacattaaataatgaatattattgcATAATACAGATAAGCATTTCAggcataatattttataatgatattaacGGATCAATTTTAAACATGACAATACATCCGCTTATCAGGcttatatgttttattgttttggaaagAGCAAAGTAATCTCAGTATCAgatctttgttaacatttttgtacAAACACAGCTTGCACATGTTGCTGGGAAGAGATGATTTACAGTTACCagacgcgcgcacacacacacacacacacacacacactctccctcttacacacacacacacacacacaaatgcaactTTCACACACAGCTCCACTTTACATCTAAACTGACGTGagttttctcatttcttttcgCGCATCTGAGTGACGTTTTACTTTAGACCACACTGATTAAGCACTACACAATTTAATTCataggttttttttcctttcagctGACAAGACTCCAAATTGTTCTTCGATTAAACTCAGTGCAATAAAACCCCCTTTAGTTACAGTGCTCAGAAAATACGCAATGCGGTGTTAAAGGATGGCGACGCTCATCCTCAACGTCAAATGCGGATGAAAACCCATGAATCACAAAGCACCAGAATATTCTTCTCCAAACCATCACGACGTCTACATCAGACACTCAAAGATGGACCCAAAATGTTTGTTCTTGACACTGAACATCAGAGCATCTGGGAAGTTAAACagtaacacagttttttttttttttcttttttttttttttttttccacaagaaacaatatttttcactttattcgtaggtttaaacatttaaaaatatgcagcTCGTTTTCTCTTAAAGGACAATTCTGGAGATACACGtacaaacgaaaaaaaaaaagaaaagaagcgaTTTGGTCATTTAACCACTCAAGAACCTCGTCATCTCACAGAGACCATTACCGTTTGCAAAATAAAGATGTTCTGAAAGCGCAGGGGCTCATGCTCAGGACACTCAATAATATGTGCTAGGGGAGAGAGGCTGGATACAAACACGTCTGCGTGAGTGAGAAAAGAATTTACAATGTCCAAAAACGAATAGTGCTGCTATAAATAACACTGTAATAACATTAAGCGTGACGCATCTAGGTAGATACAGTATCCCGTTTCGTTTTCTCTTTTCAGTGTCACCCCGACCCATATATAGCATAAATTTTCTTTTCGCTcgagttaaaaaaattatatctgaaatcaatttaaaaattatacctCAGCATTATACTGTACACAGCTCACCCAACTACACAGATAACAAAAAGTCCAAAACTTCAAGGATCCTAAATTATGATACCATTCAAAGTCTATTCATATACAGTGTAATGTTtcgtatttttttatatatatatacaacaaatcgtgaataaataaaaatagaatgatGTACTCTGATGTCTAACACGTTCCTTCCTGGAACAACAGAAAGGCTatttaacaatacaaaaaaacaccaaacggccttatatatatatatatatatatatatatattacgacTTTTCCGTTCTTTTGTGAGTCTATTGCAAGCAGGAGTCTATTTTTCAAGCGGCGCTCGTCTAAAAACGGATTCGACAAAATTTGCATCCTTGTCCAATTAACGCACCTGACTGCGCTGTGTGAATTAAAAGGAGATATTCCTGaatacgcttttttttttttttttttttttttaaataagcttgAGCAACACCAAAATCTGATGCAGACCTCATACTACATGCACAGTATAGCGCCATCTTGTGGCGGAGGCTCATTTCCTCTTTTTGACCGTACTAATTTGCTACCTTGCTCGAAAATGTGATACTTTTGACAAACTGAATGCATAGagtaataaaaaacatcacatcagTATCGCTCCGAGAGAAGGATACAGAGATTTCAGGTTCAGGTAGGCACAGCCAATAACACGGCGGACAGAAATAGAGGCTAAACCTTACGAACAAACCCAGGCCGCAATACAGATGTTGCAAAGTGAGTACGGTTCACAAATATAAGAAGTACACCCTAAAACGGTCCACATTTTATAATGCAACTCATATAATactgctggagtgtgtgtgtgtgtgaggtccaCCTGTATTGTACATCTACAAAGGTTTATCCATAAGGTCAGGTAGGGGTCATGTCCTGTGTTTTAAATACTCAGAATTGGTCCAAAATATGCAGACTGGCGTCAGGTCGTTTAGTTGTCCGCCATGTATTTTCCTACGATGAAAGCGCAAATacagttttatgttttgaatgaatgcaGCGGAACTTATTTTCTCCAGATTCCCAGGCCACTGCTGATCAAGAAACAGACGACTCACCTGCTGCAAACCTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67480 lncRNA downstream 1696 15482906 ~ 15484967 (-) True G45579
TU67460 lncRNA downstream 166629 15319385 ~ 15320034 (-) True G45560
TU67412 lncRNA downstream 247023 15185152 ~ 15239640 (-) False G45543
TU67483 lncRNA upstream 17 15489118 ~ 15490685 (-) True insl5a
TU67490 lncRNA upstream 46285 15535386 ~ 15657179 (-) False LOC122346545
XR_006251193.1 lncRNA upstream 91483 15580584 ~ 15581055 (-) True LOC122347074
XR_006251215.1 lncRNA upstream 98405 15587506 ~ 15588222 (-) True LOC122347378
XR_006251219.1 lncRNA upstream 101966 15591067 ~ 15592196 (-) True LOC122347411
XM_043242571.1 mRNA downstream 92540 15344929 ~ 15394123 (-) True sgip1a
XM_043241046.1 mRNA downstream 152730 15331236 ~ 15333933 (-) True LOC122346434
XM_043242964.1 mRNA downstream 155812 15327583 ~ 15330851 (-) True LOC122347580
XM_043241714.1 mRNA downstream 230503 15246429 ~ 15256160 (-) True LOC122346855
XM_043243037.1 mRNA downstream 275156 15187162 ~ 15211507 (-) False adcyap1r1b
XM_043242507.1 mRNA upstream 60 15489161 ~ 15490679 (-) False insl5a
XM_043241018.1 mRNA upstream 105262 15594363 ~ 15600846 (-) True LOC122346414
XM_043241327.1 mRNA upstream 112331 15601432 ~ 15603448 (-) True LOC122346598
XM_043241258.1 mRNA upstream 167635 15656736 ~ 15685485 (-) True LOC122346545
XM_043242474.1 mRNA upstream 202161 15691262 ~ 15695534 (-) True LOC122347277
TU67455 other downstream 155846 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 1293497 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1805389 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 2018724 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 2019098 13467494 ~ 13467565 (-) True trnaa-ugc_115
TU67521 other upstream 114809 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 569867 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 570792 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 872099 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 1327539 16816640 ~ 16830208 (-) True rgs8

Expression Profile