RNA id: XM_043242964.1


Basic Information

Item Value
RNA id XM_043242964.1
length 1897
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC122347580
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15327583 ~ 15330851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGTAATGCGTCTCTGGTGTGTGTTAAGCAACACGGGAACAGCTTGTCGAGACCATGTGGTTCCTTGCCATAATTTATTCACAGTTTTAACGCATTTTTACGTTCATCTCCTAATAGCGCATACTTTTTGAAGACCGACGGATTAAGATACATCCGGCACCAAATTTATTTAAGTGTAATATAGCacagaattgttttaaaaaagaaaaacgatgGCTGCGCCAGCTCAAGGCGAGGACAGTGACGATGGCATGGATGAATTCATGGAGAAgtttaaaacacagaaatacaaaaatgcgTTTAATGAAAGCAGCTGGGAGGAGGAGTTTGATAAGGTGCCCATGTTCATGAAGACAGCCCCAGAAAACATAGATCCAGAGAAACACCCTGATCTTGCCTGCATTCAGTCTATTATCCATGATGATGACAGAACACCAGAGGagaaAGCCAGAAGTCTAAAGGATGAAGGCAATGAGTACTTTAAGGAGAAAAATTATAAGAAAGCCATAGTGTCTTACACAGAAGGATTGAAAAAGAACTGCATGGATATTGAACTCAATGCGGTTTTGCACACCAACCGTGCAGCTGCACATTTCCATTTAGGAAATATGCGTTCAGCGTTGAATGATGCCACAGCTGCAAAAAAACTGAAGCCAGACCACCATAAAGCTATAATCAGAGGTGCACAGTGCTCAGTGGAGCTGCGTGATTATGCAGGAGCCTTGCAGTGGTGTGACGAAGGTCTCCGACTGATTCCCACTGACAGGAAACTACAGGAGCTGAGAGCCACAGCTGATAAACAGAAGAGGGAAGCCGACAGAGATGCCAGGAAGGCAAAAGTCAAAGCGAAAAAGGAGCAGAATGAGAAGGAAGCATTGTTAGCTGCCATTAAGgagCGTGGCATTAAACTTCTGAAGACCGAGACTTCTCCACAGGGTTCGGAcagtgaggatgatgatggtgcATCTAGAGCCCTAGCGGATCTGGAGCTTGATGGAATTGGCTCCCAGGAGGCCACTGGAGCTCGTGTTTATATGGATGAGCAGGGGGTCCTTCACTGGCCGGTGCTTTTCCTCTACCCCGAGCACAGCCAGACGGACTTCATATCTGCCTTCTGCGAGAACTCCAGCTTCATGGACCATTTGGCAGTTATGTTTGGTGAAGAGCTTCCCCCCTGGGATTCAGAAAGAAAATACCAGCCACAAAATCTACAGctgttttttgaGGATCACAAAAAAGGAAGCCTTTATCAAGTCGATCTCGAAAAGTCACTTCTTAACGTTCTTCAGCACCAAAGgtgCTCGGTGAAGGCAGGGACACCTAGTTTCATTGTGCTGGTATCAGGCTCTCCGTTTTCTAAGCAgtttttatcagaaaaaaaggtcCAGAGATTGAAATGATGGTCTGTTTGGACCTTAAAAGACTTGAAACGCCTTGGCTATAAATCACCCTCCTGCTATTAAGGGCATTTCTGCTCGCCTCACCCTTTGAGAAAACTCTAGAGATTAAGGCAGAACTTTTGAAGTGGATTTCCTTTGCAGCAACATTAATGATTCACTTTAAAAGCATGTACTATCCCAACCCTCACCCATTTTGGTGGAGGAAAAAATTCTTTCATGTGCAGTTTGAGGTATGAGTCATTACATGTGTAAGATACACATATAAAGctgattatttttagattagtCAGTATTTAACTGTGCATTTTTACTGTTGctcatattgttccaaatagtgttttttttttttcaatggaaCACTCAAGAAAATATTAACCATGGAACATTTTGACTTCCATTTGAgttgacagaaaaacaatgagacacttcttaaaatataagaaagtcatacagtttTGGAATGTCATGagtatgaataaatgatgacagaattca

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K24927 TTC4, CNS1; tetratricopeptide repeat protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67460 lncRNA downstream 7549 15319385 ~ 15320034 (-) True G45560
TU67412 lncRNA downstream 87943 15185152 ~ 15239640 (-) False G45543
TU67419 lncRNA downstream 92128 15233267 ~ 15235455 (-) False G45544
TU67416 lncRNA downstream 106558 15185152 ~ 15221025 (-) False G45543
TU67413 lncRNA downstream 113951 15185152 ~ 15213632 (-) True G45543
TU67480 lncRNA upstream 152055 15482906 ~ 15484967 (-) True G45579
TU67453 lncRNA upstream 155812 15486663 ~ 15489101 (-) True G45554
TU67483 lncRNA upstream 158267 15489118 ~ 15490685 (-) True insl5a
TU67490 lncRNA upstream 204535 15535386 ~ 15657179 (-) False LOC122346545
XR_006251193.1 lncRNA upstream 249733 15580584 ~ 15581055 (-) True LOC122347074
XM_043241714.1 mRNA downstream 71423 15246429 ~ 15256160 (-) True LOC122346855
XM_043243036.1 mRNA downstream 115602 15187162 ~ 15211981 (-) True adcyap1r1b
XM_043243037.1 mRNA downstream 116076 15187162 ~ 15211507 (-) False adcyap1r1b
XM_043241228.1 mRNA downstream 179498 15144790 ~ 15148085 (-) True LOC122346528
XM_043241713.1 mRNA downstream 206970 15092139 ~ 15120613 (-) True LOC122346854
XM_043241046.1 mRNA upstream 385 15331236 ~ 15333933 (-) True LOC122346434
XM_043242571.1 mRNA upstream 14078 15344929 ~ 15394123 (-) True sgip1a
XM_043242507.1 mRNA upstream 158310 15489161 ~ 15490679 (-) False insl5a
XM_043241018.1 mRNA upstream 263512 15594363 ~ 15600846 (-) True LOC122346414
XM_043241327.1 mRNA upstream 270581 15601432 ~ 15603448 (-) True LOC122346598
TU66983 other downstream 1134417 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1646309 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1859644 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1860018 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1860357 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67521 other upstream 273059 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 728117 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 729042 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1030349 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 1485789 16816640 ~ 16830208 (-) True rgs8

Expression Profile