RNA id: TU67521


Basic Information

Item Value
RNA id TU67521
length 1395
RNA type TUCP
GC content 0.40
exon number 3
gene id G45606
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15603910 ~ 15605470 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CtaatagcatgtttttttgttgttattgtaggACACCTCATCCGGTGGTCCGGCTCGTGCATACCCTGTAGGTGGTCTGTGTTACTATCTGTCTCCTCCGGAGTCATTTGGTTCTGTGCTTGAAGACCCAGTCCATGCAGTGATCTACATTGTATTCATGCTGGGATCCTGTGCCTTCTTTTCTAAGACTTGGATTGAAGTTTCTGGATCATCTGCCAAAGATGTGGCCAAGCAGCTGAAAGAACAGCAGATGGTGATGAGGGGACACAGAGAAACCTCTATGGTTCATGAACTCAACAGGTACATCCCCACTGCAGCTGCATTTGGTGGACTGTGTATCGGAGGACTTTCAGTAATGGCTGACTTCCTGGGTGCCATCGGCTCTGGAACAGGAATCCTATTGGCTGTTACCATTATCTATCAGtactttgaaatatttgttaaGGAACAGAGTGAAGTTGGCAGCATGGGAGCGCTCCTCTTCTAAACAAGGacactcacaaaacacacacatacttgctGACACCTTatgaaacacttttattatttttatgattgttgtcattttttatttcggTGCgatttaaacatgtaaaaatggTCTGTCACGAGTGCTGTCTTGGGAGAACGCTAGTCCAGCTGAGCATGCTCTCCTGTTTGTCAGAAGTGGCAAAACGTTTCTAAAATTCAGTGATTGGACAGTAAAGATGGACTCTGTGAGCTCTAGCTAGGAATATTAAGGAGTTTTCCCTACTCAGTCTGTCTTTCCTCTGTCTCCATGTCACTGAATCCCTTGTTTTTCTTGTCTGATCCTAGTTATGCCAGGTAAAAGGATTTTCCAGAAAGTATTGTTAATGTTGAGTTATTGACTCAACACTGCCAAGTTtgactccacacacacaaactgggttttgttttttttgtctcagtTTGTCATATCAGTCTGATGGACATTAATTTTTCCAATAATAGCTGAAATGCTCACTCTAACACTTCATACTGTATTTAATTGTGATGGTTTAGTTATGGCAAAAGATCGGTCAGCAGAATGGCTCGTCAGTTCTAAACAAGGCAACATTAAAATGGGAAATGCAACAAACAGTATGGCACCATTGGcgtgttttttgtgttgttttaggtttttttgtgtgcgtgtgctcATTTACGCTGGAATCCTTTTGTACAGAACACATCTTTCACAGTAGGTTTCAAGGATTTTCTGTTGTTGAAAGTGCTTGGTCTGTAGTGAGAGCTCAGTGGCAGACAGAACTGGTTACACCTAAAGTCTGTTTACTTTCAAAATTAAGCCCTTTTTACTGTATCATTGGGTGTCTGTATATATGACATTTAATGCAGTGTAaccatgtaaaataaatctttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251219.1 lncRNA downstream 11714 15591067 ~ 15592196 (-) True LOC122347411
XR_006251215.1 lncRNA downstream 15688 15587506 ~ 15588222 (-) True LOC122347378
XR_006251193.1 lncRNA downstream 22855 15580584 ~ 15581055 (-) True LOC122347074
TU67483 lncRNA downstream 113225 15489118 ~ 15490685 (-) True insl5a
TU67453 lncRNA downstream 114809 15486663 ~ 15489101 (-) True G45554
TU67511 lncRNA upstream 38599 15644069 ~ 15645396 (-) True G45602
TU67422 lncRNA upstream 110986 15716456 ~ 15745536 (-) False G45544
TU67424 lncRNA upstream 137485 15742955 ~ 15745536 (-) False G45544
TU67429 lncRNA upstream 137485 15742955 ~ 15745536 (-) True G45544
TU67565 lncRNA upstream 151956 15757426 ~ 15760573 (-) False LOC122347279
XM_043241327.1 mRNA downstream 462 15601432 ~ 15603448 (-) True LOC122346598
XM_043241018.1 mRNA downstream 3064 15594363 ~ 15600846 (-) True LOC122346414
XM_043242507.1 mRNA downstream 113231 15489161 ~ 15490679 (-) False insl5a
XM_043242571.1 mRNA downstream 209787 15344929 ~ 15394123 (-) True sgip1a
XM_043241046.1 mRNA downstream 269977 15331236 ~ 15333933 (-) True LOC122346434
XM_043241258.1 mRNA upstream 51266 15656736 ~ 15685485 (-) True LOC122346545
XM_043242474.1 mRNA upstream 85792 15691262 ~ 15695534 (-) True LOC122347277
XM_043242475.1 mRNA upstream 150839 15756309 ~ 15765107 (-) True LOC122347279
XM_043241361.1 mRNA upstream 546676 16152146 ~ 16253840 (-) True mast2
XM_043241360.1 mRNA upstream 649171 16254641 ~ 16256080 (-) True tmem69
TU67455 other downstream 273093 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 1410744 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1922636 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 2135971 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 2136345 13467494 ~ 13467565 (-) True trnaa-ugc_115
TU67688 other upstream 453498 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 454423 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 755730 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 1211170 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 1581219 17186689 ~ 17187318 (-) True G45895

Expression Profile