RNA id: TU67663


Basic Information

Item Value
RNA id TU67663
length 1218
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G45709
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15902216 ~ 16118586 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgaacaaaatattttctttattctgcAAGAGAACTGAATATCGTGGAGTTCCATTGATTATATACATGAGTTCACCTCATAACAAATGGAGAGTCTACAACCAATACAAACTATTGTAACAGATACAAGAAAATGTTGTTGTGGAAACCGAAGAATACCGATAAGTCTGAAGCAACAACGATACTCAAATACTGAGAGAGAGGATTTCTGACGTCTCTTGTTCTCTACATGCAGAGCTAAATTATCTCACGTCCTTTTGTGCCATAACTTTTCTAATAAGACATGAAACAACTGTTTTACAGAAGCATAAATGGACCAGAGCCGTGCAACACGTTTATTTTCATTGCAATATGTCGTTTTTTTTGGACATTGAGAACCCGTGGCTTATTGCTCAAGCTGAGTCTATAAAAGTCCAGAGATGAATGCACTGCTGGTGTTAAGGGAATATTTAGATTTACGCAGAATAAAAGTGAGCATTCAGTCAATACGATGATCCGAGTATGAAGAAAAGACATTAGTTGAAAGGTCTCAGATGAGATACATGTATACGTTACTGAGTCGGTTGTGCAAGCGGTATTGAACACGCTGTTGTCTATTGCTTCAGCTCCTCTGTCTCAGTTTTTGTGAACATCATTTCGCTTTTAGTCACTGCAACAAAGGGCTCCAACTTATTTCAGCTGAAAAAGCAGACTTTTTTCATAAgctatattaaaatttatatttgacTACACCATAAACAGACAATTAACAGTATTTGttcaacatcttttttttttcagttttacttttttttttgtttgtttgtttttattacacaaaacAACAGTCAAGAGTACCAAAGAAGCATGCTGGGTTTTACGTATGTCAAAGTGGGAAGGAGAGTGatagtttggggtttttttttgtttttttttttttttttgttgttgttgttgttgttggtatgttttttttttgttcagaaacTGTTCCTCCCTCCCATgagtgtagttttttttttaattttggggggCGAGTCTTCATCTCCGAGGGCCTGAGGGCATCTGTGCATACACTGGGTACGCCAGCCGCACGTTGAGCGAGTCGTTGTGCTGGACCAGTGAGGTCTGGTGGTAGTGCAGGACCAAGTCTTTCAGAGTGCTGTACAAGTTGTAGGGCTCGGCGAAACCGTAGCCGCGGGGTGTGCTGTAGATGACGCAGTGCTTCACCTCGCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251199.1 lncRNA downstream 63791 15843131 ~ 15877467 (-) True LOC122347156
TU67565 lncRNA downstream 180685 15757426 ~ 15760573 (-) False LOC122347279
TU67422 lncRNA downstream 195722 15716456 ~ 15745536 (-) False G45544
TU67715 lncRNA upstream 148597 16267183 ~ 16267542 (-) True G45751
TU67716 lncRNA upstream 150329 16268915 ~ 16269392 (-) True G45752
TU67717 lncRNA upstream 152316 16270902 ~ 16271108 (-) True G45753
TU67746 lncRNA upstream 201827 16320413 ~ 16322805 (-) True G45770
TU67946 lncRNA upstream 1068870 17187456 ~ 17187794 (-) True G45897
XM_043242475.1 mRNA downstream 176151 15756309 ~ 15765107 (-) True LOC122347279
XM_043242474.1 mRNA downstream 245724 15691262 ~ 15695534 (-) True LOC122347277
XM_043241258.1 mRNA downstream 255773 15656736 ~ 15685485 (-) True LOC122346545
XM_043241327.1 mRNA downstream 337810 15601432 ~ 15603448 (-) True LOC122346598
XM_043241018.1 mRNA downstream 340412 15594363 ~ 15600846 (-) True LOC122346414
XM_043241361.1 mRNA upstream 33560 16152146 ~ 16253840 (-) True mast2
XM_043241360.1 mRNA upstream 136055 16254641 ~ 16256080 (-) True tmem69
XM_043242669.1 mRNA upstream 153431 16272017 ~ 16277301 (-) False LOC122347419
XM_043242670.1 mRNA upstream 153431 16272017 ~ 16277300 (-) False LOC122347419
XM_043242668.1 mRNA upstream 153431 16272017 ~ 16277300 (-) True LOC122347419
TU67521 other downstream 335788 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 610441 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 1748092 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 2259984 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 2473319 13467868 ~ 13467939 (-) True trnaa-cgc_55
TU67772 other upstream 242614 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 698054 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 1068103 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 1189229 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1625129 17743715 ~ 17774107 (-) False opa1

Expression Profile