RNA id: XM_043242527.1


Basic Information

Item Value
RNA id XM_043242527.1
length 1551
RNA type mRNA
GC content 0.39
exon number 5
gene id fam183a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16361167 ~ 16364020 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAACCGACGTGCCGGAAGTGATTAGGTGATCGTACCAGCAAACATTagcaattaaaacatatttgataACACAAAATATGGCAAACTCTAAAGCAAAAGACCCCGTGGACATAGTTCACCAGAATGCCATTCATGTCGAGACAATAATGAAGGAGCTGAGACACCAGAAGCTTTACACTGAGTTCAACATCAACCCCTTCAAGAAACTGCACTTTCTAACTGACAAGCCCATGTCCAACATCGCCTAcagaaaagaagaggaggacCCTGCTTTTGTCCAGGCCATACACAGGGCCCATCTGGAGCCCACCAAAAAATACTCTCACCCTCAGACTGAAGCACAGGAGATAGGATGGATGTCATGCCCTTTATTTCTATTTTCACACTCCATAATGGATTCATTCCCAAATCGTTTCAGATCGCAGTGACAGAAGACTAAATTTTCCACGGCAGAACTCTGAAATCACTAAATACATGGATGCTGCATGGAGGCTGAAGGAGCAAACACAAAATTTGTGATGACTGTTCAAGTTATATGTTTCTGATTCCATATGCACTACGTAAGTCTATATAGATAAGTCTAGTTATCATCTGTGGGAACTGCAAACTGGCCATTTTTTGTTTTCGGACATGAACACAAAATGCAGgagtacaaatatattttagagaGCACATACTCACTGATACAGATATGCTAGGTTGGGTTTGCACAGAGGCTGGAGGTCTCAAAATCCCCTGAGCTGCCCACCTAGACGGTGTTTTTACCGTTTTTCAAAGCAGGTCATTCGATTTGAAGACACAGCCGGGGTGTTTAGAAATTCAATGGTGTATCTAGAGATATGTTAAAGTGGGTCAAACGGCCACCATTCATCACTATGAACGTGTCTGCTCCTGTCCTGCAGAATCTCTGCATAGTAAGCAAAAGAGATTAGTTCATAACTAATCGATCTTAGATAATGCCATATTATACAGAAATAGGATTCACACTGATTGTTTTGCAAATGTGCCTTTTTcacaagaaaaatcaataactGTGACCATAATTAACTGGTGGTTTATTAGGACATATTACCTATAACGTATCGGCCACTTGGGTCaggatttattatattacttccCCCAAAAGAAATGTGCTTTATATGAAGATACAgtagtatttttgttgtttcttaCAGAAATGCACTGAAATCGCCTGTACTCAGTTTtcgtaaaataaaatcagtaattagttcacactaaaataaaaattctgtcataatttatttaccCTGATGTTTCAAACCTGCATCGAGTCTCTTCGTGTGATCAACTGGTGCTGGTCGCCATTAactttcatgttatttttttccccatgcaaTGGGAGCTAATGGgtaccagcaactgtttggtcaccaacattattctaaatatcttcttttgtgttcaacagaagataACAgcttaaataatgacagaatggtCATTTTGTGTGGACTATCAATTTAATGTTATAGAGGAATGGAAGCATGTATCCCTGGacaccaaaaatgtaataaaaacatatcatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 38362 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 90059 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 91775 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 93625 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 242581 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 823437 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 879661 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 1049019 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 1150619 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 1443602 17807621 ~ 17808115 (-) True G45993
XM_043242684.1 mRNA downstream 10898 16340305 ~ 16350269 (-) False LOC122347428
XM_043242685.1 mRNA downstream 11139 16340305 ~ 16350028 (-) False LOC122347428
XM_043242683.1 mRNA downstream 11142 16340305 ~ 16350025 (-) True LOC122347428
XM_043242792.1 mRNA downstream 49514 16299579 ~ 16311653 (-) True tie1
XM_043242785.1 mRNA downstream 62242 16292195 ~ 16298925 (-) False mpl
XM_043241234.1 mRNA upstream 20317 16384336 ~ 16388414 (-) True dmrt2b
XM_043242977.1 mRNA upstream 199931 16563950 ~ 16570461 (-) True mier1a
XM_043242978.1 mRNA upstream 199931 16563950 ~ 16570441 (-) False mier1a
XM_043242455.1 mRNA upstream 207125 16571144 ~ 16578063 (-) True slc35d1a
XM_043242456.1 mRNA upstream 207125 16571144 ~ 16578056 (-) False slc35d1a
TU67689 other downstream 300701 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 301400 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 755697 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 1030350 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 2168001 14160475 ~ 14193166 (-) True G45257
TU67937 other upstream 452621 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 822670 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 943796 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1379696 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 1379696 17743715 ~ 17774107 (-) True opa1

Expression Profile