RNA id: TU67974



Basic Information


Item Value
RNA id TU67974
length 1006
lncRNA type sense_over
GC content 0.44
exon number 2
gene id brinp3a.2
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17382327 ~ 17414139 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGGTTTTATGCATATCCTCCGAAAAGCCATTACAGAGGGCTACTTGTGTTTTAAACATGTGACTTGGGTGAGAGAGGGCGCGCGCCCGCGTCTGCCAGCGTCTATCCATTGAAATTtggctctgtctctctcacacacacatacacacggaCAACGATGCGGAGTAGGAGGGTCAAGCAGAGCTATGTGATGGGACTGACTTTATAGAGGAATATCTACAGGCACTTTCAACAGAGACCGAAAAGCCTCGGTGTCGCAGTCCGTTGGCGGATGTTAAACTGAACCACGCGCTTTAACTGATAGCTGCGGTCTGTTTCTAACTGTCTGTACTGCTAGTGGATTTATCTATTCGACATTTTTTTTGACTAAATGCGGTTATTTCTTCTTCAGGGAACAATTCTGAGCACTACACGGATAACCTTGTCTTCGCGTTATAATGGGAGCGCTTTGTTTCCGAAGTTGGACTATAGTGAAGTAGCAccgatttaaatatttaggtgCTGCCCGTGCGACCTTTCGTCCATTTTGTCTTTACGCCAAACAGTTTTCATTACTTCCGAGGGTTTTAAGCTGGTGCCCGTTAAATACTCTTGTGAAGaacgaaaaaaaaactgattctgCGAAGAATGGGACCTTATCGGGTGAAGTTTCAACATTGAGCTACGTTGTGCGGGACAACTTTGAACAAACGCTACCTGATCGTCACATCGTTCTCATGAATGATGAGCATAACCTTACAGCAGCCCATCAAGACTACACAGCTTCTTACACGAGTTACAACTGTGATCCCTCAAGACCATTCATGTATTTATGCCATGTGGTGTTTGATACATAGACacgtctctctcgctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacaccaagttGCAATTCTgctacaacattttaatttttttatgtgtttttctaaacattttagGATACTCAAATCTCTGATAGACCTTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67960 lncRNA downstream 166669 17243680 ~ 17246369 (-) False LOC122347244
TU67946 lncRNA downstream 225244 17187456 ~ 17187794 (-) True G45897
TU67746 lncRNA downstream 1090233 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 1141930 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 1143646 16268915 ~ 16269392 (-) True G45752
TU67995 lncRNA upstream 100499 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 393482 17807621 ~ 17808115 (-) True G45993
TU68093 lncRNA upstream 408397 17822536 ~ 17822735 (-) True G46000
XR_006251164.1 lncRNA upstream 626225 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA upstream 628508 18042647 ~ 18044630 (-) True LOC122346731
XM_043242414.1 mRNA downstream 166652 17235790 ~ 17246386 (-) True LOC122347244
XM_043242413.1 mRNA downstream 188128 17217987 ~ 17224910 (-) True LOC122347243
XM_043240971.1 mRNA downstream 486670 16898685 ~ 16926368 (-) False brinp3a.1
XM_043240970.1 mRNA downstream 486670 16898685 ~ 16926368 (-) True brinp3a.1
XM_043240975.1 mRNA downstream 582777 16817378 ~ 16830261 (-) False rgs8
XM_043241039.1 mRNA upstream 139364 17553503 ~ 17555239 (-) True LOC122346427
XM_043241041.1 mRNA upstream 254048 17668187 ~ 17669843 (-) True LOC122346430
XM_043241931.1 mRNA upstream 329576 17743715 ~ 17774106 (-) False opa1
XM_043241930.1 mRNA upstream 329576 17743715 ~ 17774106 (-) False opa1
XM_043241932.1 mRNA upstream 329576 17743715 ~ 17774106 (-) False opa1
TU67962 other downstream 104560 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 225720 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 582830 16816640 ~ 16830208 (-) True rgs8
TU67772 other downstream 1049018 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 1352572 16059893 ~ 16060466 (-) True G45731
XR_006251188.1 other upstream 329576 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 329576 17743715 ~ 17774107 (-) True opa1
TU68751 other upstream 1230167 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 1300035 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 1641007 19055146 ~ 19056131 (-) True G46478

Expression Profile