RNA id: TU68576


Basic Information

Item Value
RNA id TU68576
length 2043
lncRNA type read_through
GC content 0.43
exon number 2
gene id G46300
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19247053 ~ 19298999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACAATGGGGTAATAACAGTAGTTCCAATACCAGAAGGTCTTAGGAAATGTGCCAGTGAGATGGGACTCTGGTACAAAAGGATGGAATGTCTCTCTTTCTAAAGTGTCTCTGGAGTCTCCTGCCACGACGCCTATCTTTTCCATACACTGACCCAGAGCTAGGTCCTCCACGGAGCTAGTGTGAGTGCACACTTTGGTGCGAAAGCCCTCCACAAACCTCCTCAGAGCCTCTTTGCTAAGCACGTAACCAGCGCCGCCACTCATGTAACCCTGTTTTACATACGGCTTAAACCTCCGGCCAAAATACAACGGGTCCTCTGGAGAGTGGCTGGCAAGAATCCAGCGCAGGTTGTCAACGACCACGTAAGTGTCGTCATCCGCTTTGAGGAACCAGTCTGCCTCATCGCCGTGCTTTTCCATGACGTAGTGAAAAGCACGAATGGTTTTCCAGTACAGCTGATCTCGACCTTCCTTGGTGTTTAGGCCAACCGTAGGAAAATCAGGGTCGTCCACAGAGCTTATGAAGACCACAATGTTGCAGTGACGACTCCATGTAGCTTTCACGTGCCGAGCTTTCTTTTCGAGGTTATTGGGGCCGGTCATGACCCAACACAGAATGCGTACGCGCTTATAGAGAGCGTCAGCGAGAGTGCCATCCTCACCTGCAAGAGACAGACAATGATTACtctgaaaaataacacaaacacaaaatgctACACATGATACAAAGTAGAAAATAGAAATGGAAAGTAgaaatttttaatgtaaatgatgaTAGTAAACCTTTTTAGAATGAGAATTAATTTTTTGGGGCCAAATGCAGGACCTTTTAATGTTATAGTTTACttaaaaattgaaattttgtaataatgttgtttatctaatgtcattccaaagcaagctagttcttttttttttttttttttttttttTTGTAGTCTCAGATTTATTGTATTCAGATTTAAGTTGGTGTCAAGTCaatcaatacaaaataaatctgGTTGAACATGGTTTCATTTTTGTTGCACTTTTCCATTTATAACAGGGGCTGTAAAATACGCTCTGGAAGCAGTTTGAATAAAGGGGAAAGTATAAGGTAGTACAGTCACCACACAGTAAATGCAGCTCTCTGCTTTCAAGTCAGCAAGTACACACAGTTTAGGAGGGATGGTCCATGGAAATGCCATTGTGCCTGTTTTTTGCTGTAACAGATCTCCCTAGAATGTGAGGTAACTGGACATTGGAAGCCCACAAGTCACTGCCATCAGTTATAGGCCGAGTACAGCATTGTACTTTTTATAGCAGATAGGTAAACTAACACTGACAGCCATTGCATAAAGTCATATTCGTCAGCAGAAATACAGCAGGGAGCTTGAAACAGCACAAAACATTCAACCAGGACTTTCAGGACCTGTATAGCACATCCCTGATCCAGTGAAACCATAGTACTGCTTGTGGTTATGCTAATGAGACTGAAATCCAATTGTTGTGAAGGGCCTAATTGGCTTCAGTGGtttctatgtgtatatattgcATTCAAGTCTCACTTTCCCTATACATATCAgtgcagaaataaaacaattcagtGACTGGGAGCACATATTCTCTGTTACATTCTTTctggtgttattttagtgtagTTGGGTTGATTTGACTTAATATGGCAGTGATGCCACCAGAGAAGAGATGCATGTTTTGCTGTAACTACCCTCAACACACAGAGCAACCTAaaacttaatttgtgtttaagaAATCATTGTCCTCATCTCCTCATTAACAGGGGATAGCTGTCTGGCTAGAATATAGCACCATAGATGGTTTGAGTTGTAAGAAGGTTCAGAGTGATCTAGTTGCAGGTAAGGAAAATAGGATGCCGGGATGGGTTGGGTTGGGGGTGCTTCTCTTTAAAAGCGTTTACTGCTGACAGTGGTGACGCTGGTTTTGCTGATGGAACCTCCGCCATATCCTGATCCAGCACCAAATCCTGAAGAGCCACCGTAACTTCCGCCATAGCCGAATCCAGAGCTGCTACCAGAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68591 lncRNA upstream 16612 19229796 ~ 19230441 (+) True G46305
TU68527 lncRNA upstream 23767 19221292 ~ 19223286 (+) True G46265
TU68538 lncRNA upstream 113450 19118052 ~ 19133603 (+) True G46272
TU68541 lncRNA upstream 190922 19055216 ~ 19056131 (+) True G46275
TU68523 lncRNA upstream 250633 18995338 ~ 18996420 (+) True G46261
TU68574 lncRNA downstream 1396 19300395 ~ 19303013 (+) True G46299
TU68647 lncRNA downstream 86607 19385606 ~ 19454365 (+) False G46347
TU68650 lncRNA downstream 86607 19385606 ~ 19454365 (+) False G46347
TU68659 lncRNA downstream 105466 19404465 ~ 19407876 (+) True G46353
TU68661 lncRNA downstream 109749 19408748 ~ 19409488 (+) True G46355
XM_043241813.1 mRNA upstream 3624 19240813 ~ 19243429 (+) True tac3b
XM_043241007.1 mRNA upstream 28027 19215804 ~ 19219026 (+) True gpr84
XM_043242681.1 mRNA upstream 33667 19208664 ~ 19213386 (+) True LOC122347426
XM_043242482.1 mRNA upstream 41269 19192088 ~ 19205784 (+) True LOC122347294
XM_043242381.1 mRNA upstream 133490 19110188 ~ 19113563 (+) True slc48a1b
XM_043242578.1 mRNA downstream 29520 19328519 ~ 19332524 (+) True krt18b
XM_043241902.1 mRNA downstream 35408 19334407 ~ 19344958 (+) True si:dkey-195m11.8
XM_043241082.1 mRNA downstream 94453 19393452 ~ 19395355 (+) True LOC122346460
XM_043241083.1 mRNA downstream 97638 19396637 ~ 19398441 (+) True LOC122346461
XM_043241084.1 mRNA downstream 97664 19396663 ~ 19398441 (+) False LOC122346461
unassigned_transcript_1265 other upstream 94880 19152102 ~ 19152173 (+) True trnaq-uug_14
TU68431 other upstream 658606 18577278 ~ 18588447 (+) False atp10a
XR_006251243.1 other upstream 1082099 18156655 ~ 18164954 (+) False tubgcp5
TU68129 other upstream 1250336 17995191 ~ 17996717 (+) True G46022
TU67943 other upstream 2059745 17186708 ~ 17187308 (+) True G45894
TU69007 other downstream 281490 19580489 ~ 19581824 (+) False itpr1a
TU69008 other downstream 282197 19581196 ~ 19581824 (+) False itpr1a
TU69089 other downstream 485178 19784177 ~ 19786297 (+) True ghrl
TU69241 other downstream 788092 20087091 ~ 20095641 (+) True G46742
TU69535 other downstream 1332997 20631996 ~ 20637951 (+) False LOC122346811

Expression Profile