RNA id: XM_043242401.1



Basic Information


Item Value
RNA id XM_043242401.1
length 802
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC122347235
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18706623 ~ 18707596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGacggaaagaaataaaaagaagaagacaAACACGGGTGTCCTTGTGAACGTTGGCATCCTCGCAATTTTAtatcctacatttttttttacaataaattacagCTATGAAGGTTAATCCTGATAAATGGTACCGGAATGCGTCAATGCTGTATGCTATTGGTGTTTGGACCGTACTTGgtagtttattttgtaaatacaggTTCGGAGATAACGTAGCCAAAGttgaacAGGTCGATGACGACGAGCATAACGTGGAGgtatatgaaacaaaatatacTCGGACCACAATTATCTACAAGAAGGATTCTGTGCCATATTCCACAATGCTTCTCAACTACATCAATTCTAAGTTTGGGAGCTCTAAAGAGAGTCAAAACAAGAAGACGGAAATGAGCTGACTGTTTGCTTGCTTGGTTTTCAGAAGAAAAGattcattgttttttcatttctaaattaaaaagcaaaatctGTGTTTTGCAATGCTACGACATGAATAACGTATCTGATGGTTGGCTTTGGAGATCTAAAGGTGAATATTTTGTTCGTTGCATCGGTGTTAAATAAACAGTTGACCCCAAAAAAGGAAATTTAATGAAGAGTTTACTCACATTAAAGACAAGGGTGATTTAGTTTTGCTTCCAGAACagattaattgaaatgtaaCATTAAGTTCCTTGttcagtggatcctctgcagtgcaTGAGTGCTGTCAGAAAGAGTCAGATGGCACCTCACAGCAATCCACACCACTTCAGCCCACCACttaatgtcattaaataaagtcaaaagctttgtaataaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68733 lncRNA downstream 19799 18603991 ~ 18686824 (-) True G46412
XR_006251132.1 lncRNA downstream 63270 18642722 ~ 18643353 (-) True LOC122346470
TU68387 lncRNA downstream 346642 18359679 ~ 18359981 (-) True G46172
TU68375 lncRNA downstream 373357 18332843 ~ 18333266 (-) True G46160
TU68349 lncRNA downstream 455988 18249934 ~ 18250635 (-) True G46140
TU68768 lncRNA upstream 53988 18761584 ~ 18762435 (-) True G46432
TU68775 lncRNA upstream 150116 18857712 ~ 18858471 (-) True G46439
TU68781 lncRNA upstream 175256 18882852 ~ 18886400 (-) True G46444
TU68814 lncRNA upstream 262574 18970170 ~ 18972370 (-) True G46463
TU68844 lncRNA upstream 336020 19043616 ~ 19043869 (-) True G46476
XM_043241259.1 mRNA downstream 891 18702854 ~ 18705732 (-) True LOC122346546
XM_043242319.1 mRNA downstream 217749 18458127 ~ 18488874 (-) False gabra5
XM_043242320.1 mRNA downstream 222436 18458127 ~ 18484187 (-) True gabra5
XM_043242318.1 mRNA downstream 222447 18458127 ~ 18484176 (-) False gabra5
XM_043240994.1 mRNA downstream 250836 18363838 ~ 18455787 (-) False LOC122346396
XM_043241381.1 mRNA upstream 35469 18743065 ~ 18744116 (-) True LOC122346645
XM_043242960.1 mRNA upstream 55649 18763245 ~ 18765483 (-) True LOC122347578
XM_043241306.1 mRNA upstream 278454 18986050 ~ 18988440 (-) True LOC122346582
XM_043241881.1 mRNA upstream 363809 19071405 ~ 19078891 (-) True cnga3a
XM_043242375.1 mRNA upstream 406082 19113678 ~ 19123976 (-) False hdac7b
TU68751 other downstream 61489 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 932516 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 932516 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 1398145 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 1519305 17186689 ~ 17187318 (-) True G45895
TU68756 other upstream 6578 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 347550 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 407465 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 845723 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 845723 19553319 ~ 19555931 (-) False tsfm

Expression Profile