RNA id: TU68844


Basic Information

Item Value
RNA id TU68844
length 254
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G46476
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19043616 ~ 19043869 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gGGAAGAAGAGCGGCAATAGGTGTGACAACACACAGAATGTAAAACACAGGGTCTCCCAGCAGCCTCTGCATGGTCCAATAAGTGTTggagggagagaaacaggttggGCAGGAAGCATTGTAGCACAGCGCCACAGTAAAGAAGAGAGCTATACTGAAGCCAATCGACACCCAGTTCATCCACGTCTGTGAAATAATTACAGACAATCAAGGCAGGGTTAAGAAAGAGTTGCTAAATTGCCTGAAGTAGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68814 lncRNA downstream 71246 18970170 ~ 18972370 (-) True G46463
TU68781 lncRNA downstream 157216 18882852 ~ 18886400 (-) True G46444
TU68775 lncRNA downstream 185145 18857712 ~ 18858471 (-) True G46439
TU68768 lncRNA downstream 281181 18761584 ~ 18762435 (-) True G46432
TU68753 lncRNA downstream 322448 18656842 ~ 18721168 (-) True G46421
TU68845 lncRNA upstream 759 19044628 ~ 19048746 (-) False G46477
TU68847 lncRNA upstream 835 19044704 ~ 19048836 (-) True G46477
TU68850 lncRNA upstream 835 19044704 ~ 19048746 (-) False G46477
XR_006251202.1 lncRNA upstream 105877 19149746 ~ 19151694 (-) True LOC122347223
TU68898 lncRNA upstream 168770 19212639 ~ 19242811 (-) True G46509
XM_043241306.1 mRNA downstream 55176 18986050 ~ 18988440 (-) True LOC122346582
XM_043242960.1 mRNA downstream 278133 18763245 ~ 18765483 (-) True LOC122347578
XM_043241381.1 mRNA downstream 299500 18743065 ~ 18744116 (-) True LOC122346645
XM_043242401.1 mRNA downstream 336020 18706623 ~ 18707596 (-) True LOC122347235
XM_043241259.1 mRNA downstream 337884 18702854 ~ 18705732 (-) True LOC122346546
XM_043241881.1 mRNA upstream 27536 19071405 ~ 19078891 (-) True cnga3a
XM_043242375.1 mRNA upstream 69809 19113678 ~ 19123976 (-) False hdac7b
XM_043242373.1 mRNA upstream 69809 19113678 ~ 19123976 (-) False hdac7b
XM_043242374.1 mRNA upstream 69809 19113678 ~ 19123970 (-) True hdac7b
XM_043242376.1 mRNA upstream 69811 19113680 ~ 19123976 (-) False hdac7b
TU68756 other downstream 326128 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 398482 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 1269509 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 1269509 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 1735138 17307815 ~ 17308478 (-) True G45910
TU68851 other upstream 11277 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 71192 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 509450 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 509450 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 622565 19666434 ~ 19666506 (-) True trnaf-gaa

Expression Profile