RNA id: TU68845


Basic Information

Item Value
RNA id TU68845
length 4119
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G46477
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19044628 ~ 19048836 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAAAATGTCAGAGAACCACTCGAAACGGGTGTTTTCATGAAGGGCTGGCAACATAGCGAGTGTACAGCGAGAACAAACCGAACCTTTGTGTGACTACAACAAACACCAATTACAGTACAATGAGCCAGAAACAGTCATGGCAGTgacagtgataaaaaaaaaagtcatgctgGGTATCAAAAAGTCCACCCAACGATTACACGTGTGCTATGACCAACTCTGAAGGACGGCATTCCCGCTGGTGATCTGCCCTGAAGTTAAGGAAAGGCTCTGGAATGCAGCTGTGAATGGATTCTATTACAGCATGTGATGCTCGGCCAAGAACCTGACAGACCTGAAACCTGGGATCCAAGTACTGGCACATTCCAttctaaaacaacaaacaaatatagtccggagaacaaaaatacagcataatttcacaatttgttaaaaaaccaaaaggattttgttttatcaaacctcatttattaatataactcCAAATACCTTTTACATATACTGCACATCTATAAAATTCACTGTATGTATTGCGGTCTACAAATGCGATCTCCAGTGTTAAGGCACATAATATATATTCCACATCATATAAAACTGTTTTCTTGCGCATACTAAAGCTCTTCAGCACATATAAACGTTGCCTTTAACAAactatggaaataaaaaaaaaaaagcttcggGTGCTATAAACATTACACTTTCGAAGAGACGAAAATATTGCTCCAAGTGGCGAACGCTGAACCTGAGCTGTGCAGAAGAAAAACCGAAGGGACAAAGTACTTGTGTGCTTTATATTAGCTTCTTTAGGGTTTTACTATAGTATCCAGACACATACAGAAAGAATTAGTTCATGAATGACAGGAAACTACCATCGAGATGCTAACGTAACacccctgtttttttttttggtctgagCGCATTCTGTTCACACCATTCGTTGTGTAATGAGCACAATAGATCTCATAATCCTCCTGGTAGGCTGTTCATAAATCAGCGGTTTTGATAGCGACTGCCCAAATGAGATCCCGAACGAACAGATTGGCGAGGCCTTGAGGTTATGCGAGCACAGCATGACAAATCATctcataaaaactattttagcaTCTCTCTAGGGGACTCTATAATACGCCACACCCCTGACATTTGCGGAACTGTGGAATATTGTCTTGCGGAACAAACGGATAACCACCCATGTGTTCTTCAGAACCTTTCATTACACATATTACAGCTTTAAAACTATGAGAAGTCAAAGTCACAGACTAGTCCGATTCCCTTAGAACGGGCCGTTTTCATGAATGTATTGTGGGGGATCGTGAGGGCGAGCGAGACACTAATGCATACAATACATGATTCCTGTCACGATAAAATAGGCCCGGTTTGGGAATACAAACTTAAGCGGTGAAGACACTTAGTgacagttcagccaaaaatggcATTTCTATCATTATGTACTCACCCTCAATAACATTCCAAACCAATATGACTTACTTCTGCagaataccaaaaaaaaaaaaattgtgcatgcAGTGAAAGTCCCATTGACTTTAATTGCATGGAAGTTATTTTGTGTTAAACAGATGAAATTCAAACCGGTTTGGAATGATACAAAagcaagtaaataataaaaaaggggTCATTTTGGCCAAAATATCCTTTTAATAGAGTAGCCCACTGAATTGCTAATTAATAAAGTGATCGGTTACAGTACAAATGCTCCAGCACTGTGCTTCTTGCATCTTTGGTCTTTGATCACGTACATAATAAACAGCAGAAAAATACAATCATAGCAAATAGCAGAAGACGCACATACTGTATATCTCAACAGATCAGGTGGGAAACCGTCCTAAAACAAATGGTGGAAAGTGACCTTTCTGTTCGCACTTTTCTGCTCCTTAACTGTCAAATTAGCTTGATGCATCTGCCTCTATTTCTTAAAGCACATTTCGCTATGACTGAATGAATAgaactatatgtatatatatatgtatatatatatatatatagacacatatatatataaaaagcaaaagtaaaatcCTATCCTGCAGGAACGTGTTTAGAAACAAAAGCAgcagcaaaaaagaaagaaaaagtcaaataCTTGAGCAGGAACCTGCCATAAGAAGCATTCCTATATGCATGAATAGCTCAATGGAGTACAGTTGACTCTAGTAAGCCAGTATTGATGATGGTGTGAGATTTGTGAGATGACATTTTACTCTGGCAGATGTCTAAGAGCTTCAATAATGGAACACAATAGAGTACAACGTCATGCATAGTCCTTCAGACAGCATCAACAAGTGTAGAGTGCATCTCTTGCTCAGCACTAATTAAGATCGTCAGGGGATCTAACAACAATTCACCGAATATTTAAGGAATTCCACCAATACTTTACAAATAGGGTACATAAATCATGCATTATTACTTGAACAAATAGTTTAACTAATGAGGAATGAACTCACAGACTAATCAAGAACCAATTAAGCGCTAGCATGAGATATGGCTGGAATCATGTGAATAATGGCCACTTTAAATACATGTTTGATAGTTAAGGCATTCGATTAGCTGTATGACAAAGAATTCGAAGTAACAAAAAAGCCCCAATTAGATTATAAATAggattattcatttaaatgataaagtgTGATTATCCAATAATGTTCTTAAAGCGGTAGATGTGAAGCGAATGTTATTCAGGCATTACAATCATGCACGTTTAATGAAAGTCAGAGCAGGTTTTGCCACATCACATTCTTTGTAATAGAAATCGTTTGATTTAAGTGAACGTGAGGTCACAACAAATATTCACTAGCATGATGTAAAAGTAGTTTTGTTGCTGACTCCTCTCGCACATTATTAATTCTTGATTAGTTCATGCCTTTAATCGTTTAGGACTTCATGTACACTTTCGTAAAGCGTTACCAAAATTCCTGTAGCTACTGACTCTGAAGGGCtagatgatttttttgttctggGATGGGGAAATACGCGTGTAGTGCTATCAGCAGTGTCTAATGGTAGGACAGGAAGTTCTTTAAAGTGCACCAGAACATCCAGGttcaaataaacagataaaaggAATGTCTCTGGACTGCCTCTGCATCGAGATACAAACCTCCTCCACTTttgagatgtttaaaaaaaaaacaaaaaacaaaaagaagaaaacaaaaataaaaagtcagtcATTAATCATAAGGCCATCCAGTTTGCATATGTTGGCCTCtctctcaaaaaacaaaaactaaactttatacatctaaaaatatatatttatatacgtaGTACCAACCTATAtctttcataaaataatattgaatatataataacacttttttttaaagctaacgTGCAAATTTGAATGAGCGTAACAGGTAGAAAGCATCatagaaatgttgttttgagtGAATGTTCTTGTAGGCAGCTAGTTGACTGCTTGTGATCCACATCCCTGGCCTGTTTCAGCAGGGACTTTTGGTTTGAATGGTCCTCGTCTTCCAGCTTTTGCCCACAAAAAAAGCTGACTGGCGCTGTGAGTTGCATAGTCTCTGCCTGAGGAAGCAAGGGAGTGGAGGTGAGCAGCCCGACCGGACAGAGGTCTGTCGGGCTCAGCGGGGCCTCCAAGCCTGTGCTATCCAAAATAGTCCTGGAGGCCGGAGTGTCTTTGGTGTACGGCAGAGTGCCTGCAGCGGGACTCGAAGGTTCCTTTATGCAGTGTAAGTTCTCAGATAGAGGGCCGCCCGAGCCCTGTCTGCAGGATGGAGCTTTTTCCTGCATTCTGAGGTTGAGTGTGATATGGTTGTCAGAGTTTTTTGAGCTTAAAGGCGTGTCCCGCATCTCCGTGCTTTTTGATGGGATGGGGCTGGATATAGCTTTCTCCTTCTGTTTGGTGCTACTCATGTGGGCTTGCTTTACCCTGGGCCTGTAGTCTTTCTGAAAGGGCCTGCAGAGAGGGAAAAATGGAGCACGGGGGGGAAACAGTGACCCGAGGGAGCCCAGCTTCATCTGGCTCTGGCTCAGGAAGATCCTGCGCATGTCCACTGGCAGTTTGTCCAGTTGTCTTCCCACGTGGACAGGGTTTGGGAATAGAGTTCCCTGACAAGCCCTATAAAAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68844 lncRNA downstream 759 19043616 ~ 19043869 (-) True G46476
TU68814 lncRNA downstream 72258 18970170 ~ 18972370 (-) True G46463
TU68781 lncRNA downstream 158228 18882852 ~ 18886400 (-) True G46444
TU68775 lncRNA downstream 186157 18857712 ~ 18858471 (-) True G46439
TU68768 lncRNA downstream 282193 18761584 ~ 18762435 (-) True G46432
XR_006251202.1 lncRNA upstream 101000 19149746 ~ 19151694 (-) True LOC122347223
TU68898 lncRNA upstream 163893 19212639 ~ 19242811 (-) True G46509
TU68953 lncRNA upstream 344731 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 344731 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 344731 19393477 ~ 19397730 (-) False G46540
XM_043241306.1 mRNA downstream 56188 18986050 ~ 18988440 (-) True LOC122346582
XM_043242960.1 mRNA downstream 279145 18763245 ~ 18765483 (-) True LOC122347578
XM_043241381.1 mRNA downstream 300512 18743065 ~ 18744116 (-) True LOC122346645
XM_043242401.1 mRNA downstream 337032 18706623 ~ 18707596 (-) True LOC122347235
XM_043241259.1 mRNA downstream 338896 18702854 ~ 18705732 (-) True LOC122346546
XM_043241881.1 mRNA upstream 22659 19071405 ~ 19078891 (-) True cnga3a
XM_043242375.1 mRNA upstream 64932 19113678 ~ 19123976 (-) False hdac7b
XM_043242373.1 mRNA upstream 64932 19113678 ~ 19123976 (-) False hdac7b
XM_043242374.1 mRNA upstream 64932 19113678 ~ 19123970 (-) True hdac7b
XM_043242376.1 mRNA upstream 64934 19113680 ~ 19123976 (-) False hdac7b
TU68756 other downstream 327140 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 399494 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 1270521 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 1270521 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 1736150 17307815 ~ 17308478 (-) True G45910
TU68851 other upstream 6400 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 66315 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 504573 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 504573 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 617688 19666434 ~ 19666506 (-) True trnaf-gaa

Expression Profile