RNA id: TU68851


Basic Information

Item Value
RNA id TU68851
length 986
RNA type TUCP
GC content 0.42
exon number 1
gene id G46478
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19055146 ~ 19056131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGATTTGTTTTAGCCTAGCAGTTCTTGAAGTCTTGTGTCAGTGCAAAATCTACTTAAATGATTTAAGCAGTTCATTACCAACAGTTTCTTTTCCCCGCAAGTTCACATTTTCACAATGAgcgaaaaacaaacaaaaaatgtcagaatAAAACAACGGAGGGTTGCGGAGTTTTCCAACAACTACAGCAAGCAGGCATTAACGACAAAGGCTTCTCGTCTCCGTTTTGACAGCAAAGACGTAACTCCAGGTTTGCTGTTTTAACTTGTTCAGTGTTTCTGCTGTATTTAAATGGATTTAGCCTTCCAGAGAAAAGCGCTTTGGTTGAGGCTGCTTCTTCTGAAATGACCGCCGGTAGAAAGCATCTGCTTGAGTGATTGCAGCGAAAGCCATTTTATCCCGTCTCAGAACAGATATACTTGCAGACACCATCATAATTCATTCGGCGAGATACTAAATGGTGCTTTATAGTGTTCTCAGCGTGGCTTAATTGACATTTGATACCTGAACATGACTAATGATGCAAGAACACTTTAAGAAACATCTGTCCTCTCTTCCCCTGCCCGAAACCTCGAAACAGAAGCACTTTACTCATGTCGCCTTACTTCTCCTTGTGTCAATAAATGCTCTACACGAAGGTCAGAGGAGACTGAAGAGTTCGAATCATAAGTTAATTCATGCTGACGTTGCTGAAGCAGGAGCAGAGAGGAGCAGTCTTCGGTATGCAGGTGATAGCTCGTCTTACAGCGCTTTCCTTCTCATCAGCTTTAGAATGTGGTTAAATGGCACCGACGAAGAAGCACTCATCAATCAGCCAGCAGCTGAGCCTCTCTGTCTTTACAATTCATTTTCATCTTGGACGGAAGCCATCAAAGTCACTCTCTCAAAGGCCTAATGGACAAACAACTTTGCTAAGATCAGCACAAGACCTTTTTCAAAGGCGGAATCGTACCGTTGTTGTAAGAAACCTTTTGAGCCTCAAATA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68847 lncRNA downstream 6310 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 6400 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 6400 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 11277 19043616 ~ 19043869 (-) True G46476
TU68814 lncRNA downstream 82776 18970170 ~ 18972370 (-) True G46463
XR_006251202.1 lncRNA upstream 93615 19149746 ~ 19151694 (-) True LOC122347223
TU68898 lncRNA upstream 156508 19212639 ~ 19242811 (-) True G46509
TU68953 lncRNA upstream 337346 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 337346 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 337346 19393477 ~ 19397730 (-) False G46540
XM_043241306.1 mRNA downstream 66706 18986050 ~ 18988440 (-) True LOC122346582
XM_043242960.1 mRNA downstream 289663 18763245 ~ 18765483 (-) True LOC122347578
XM_043241381.1 mRNA downstream 311030 18743065 ~ 18744116 (-) True LOC122346645
XM_043242401.1 mRNA downstream 347550 18706623 ~ 18707596 (-) True LOC122347235
XM_043241259.1 mRNA downstream 349414 18702854 ~ 18705732 (-) True LOC122346546
XM_043241881.1 mRNA upstream 15274 19071405 ~ 19078891 (-) True cnga3a
XM_043242375.1 mRNA upstream 57547 19113678 ~ 19123976 (-) False hdac7b
XM_043242373.1 mRNA upstream 57547 19113678 ~ 19123976 (-) False hdac7b
XM_043242374.1 mRNA upstream 57547 19113678 ~ 19123970 (-) True hdac7b
XM_043242376.1 mRNA upstream 57549 19113680 ~ 19123976 (-) False hdac7b
TU68756 other downstream 337658 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 410012 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 1281039 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 1281039 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 1746668 17307815 ~ 17308478 (-) True G45910
XR_006251201.1 other upstream 58930 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 497188 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 497188 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 610303 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 786913 19843044 ~ 19847398 (-) True tspo

Expression Profile