RNA id: TU68953



Basic Information


Item Value
RNA id TU68953
length 883
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G46540
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19393477 ~ 19397730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTAAAACTTTTACCattagttattataataataaaatacttttgataACTTTAggattgtttatatatacacattaccaGAAAGGCTGAAAAACACGTTGGAAAAAGTAACTCCAAGTTGAAGGATCAGACATCACATGTTCAAGAAAGAATAATGCTCCCCCCTAAAGAAAATACGGAATGTCCATTTCTCAAAAactttgtatttgaaatacggttatttgaaattgtatttaaagCACTTGGAAACACTTATCTGTATTAGAAATTATGATAACACCAAGTATGTTGTCTTTCCACCTGAGCACAGACTGTCGTAAACTTACAGGCCTCAGAACTCTCTTTGCTTCTTGCAGAACCTTCCGTGTATCCTGGACCGAGCACAGAACCAGCGTGCACACCACAACATCCACAGAGCCGTCCCCCACAGCCTTTAGATTCTCCCCCGAAGCCACGATGAAGCTGTCATAAACGAGGTGATCGTTCTTCGCCATACTTTTCTCCAGGTACTTTTGGAAATGCGGGTTTGGGTCGATGCACGTGATCCTGCAGCCCGTCGGATAGTGCTCGAAGTTCGCCCCGGATCCGCAGCCCAGCTCCAGGATGCGCAGAGAGCCTTTCTGCGGGAAGAATTTGTCCAGGTTTCGAAATAGCTCCCTTTTGCTGTCGTTCATTTTGTCGTTGTAGGAGAACGAGACTTTATAGACGATTAGAGGAAAGACGCGTTTGTAAAAAGACATAAGTCCAATCACCTCCGCAATGTGCAGCGGTAGAGTGAGGACTTTGACTAATAGAGCGCAAGCGTTCATAAACAGCATCATTTTGACGATAAATGTGGAACACTAATAGCTACATCAGATAGACGTGAAGAGGGGAGTAGCTTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU68898 lncRNA downstream 150666 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 241783 19149746 ~ 19151694 (-) True LOC122347223
TU68847 lncRNA downstream 344641 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 344731 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 344731 19044704 ~ 19048746 (-) False G46477
XR_006251216.1 lncRNA upstream 208632 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 393912 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 403513 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 436340 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 443749 19841479 ~ 19842967 (-) False tomm6
XM_043241899.1 mRNA downstream 2813 19342093 ~ 19390664 (-) True scn8ab
XM_043241901.1 mRNA downstream 2813 19342093 ~ 19390664 (-) False scn8ab
XM_043241900.1 mRNA downstream 2813 19342093 ~ 19390664 (-) False scn8ab
XM_043241167.1 mRNA downstream 71935 19317577 ~ 19321542 (-) True zgc:158846
XM_043241839.1 mRNA downstream 90727 19297891 ~ 19302750 (-) True krt4
XM_043241081.1 mRNA upstream 1126 19398856 ~ 19404013 (-) False atf1
XM_043241080.1 mRNA upstream 1126 19398856 ~ 19404013 (-) True atf1
XM_043241078.1 mRNA upstream 6737 19404467 ~ 19434198 (-) False dip2bb
XM_043241077.1 mRNA upstream 6737 19404467 ~ 19434198 (-) False dip2bb
XM_043241075.1 mRNA upstream 6737 19404467 ~ 19434197 (-) False dip2bb
XR_006251201.1 other downstream 243747 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 337346 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 675989 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 748343 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1619370 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 155589 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 155589 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 268704 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 445314 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 698659 20096389 ~ 20102458 (-) False srsf3a

Expression Profile


TU68953 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

TU68953 Expression in each Bioproject

Bar chart with 2 bars.
TU68953 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.