RNA id: TU69221



Basic Information


Item Value
RNA id TU69221
length 647
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G46731
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20006164 ~ 20007343 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tgaaaatgtaaaatatattgttggCTAGTTCTAAACTGCTCTATGAATCTATAAATTTACAATGCatctataaaacacaaatatattaagacATTAGAAACCATGATtttctgtaaaactgcattgaAATAATGTGTATTACATATTTCCAGGcagaacaaattattaaaatgtatatttttaatgtgttccAATGCAATCCTagtacattaacattttcaaaaatacgtATTTAAATAGCCATTCATCAATAACCATTTTGAAGTAAATTTACTAATAAATAGACATTTATGAGTAAATAAAAGAATTCATGATCCATGCCGTTTCCCACACTGATTCTTGAGATGCTCTGAAAGAATTCACACTTAAAACTCTAGCTaatgaatatgtatattataataattccaTAACTTGAGGTAGAGATTAGTTGTATTATGCAAGCAGCCTACAACCAAACCAAATCTATGTTCCAGTGATGAGTCGAGTACTGAGGGTCAGAATAACTCTCATTTCTCAGAGTTGGATGGCTGGCAGCACTTCTCCACAGCGTGCACTCACCCTGATGTCAGTCAGGTGGTCAGCTCTAGTGGGTCCTATATTCACGATGGCTATTGGAAGCTTTCTTTCACTAGCAGCAAGGAGAAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69212 lncRNA upstream 6466 19991671 ~ 19999698 (+) True G46726
TU69208 lncRNA upstream 39698 19965259 ~ 19966466 (+) True G46722
TU69164 lncRNA upstream 44179 19961209 ~ 19961985 (+) True G46690
TU69196 lncRNA upstream 56496 19949228 ~ 19949668 (+) True G46711
TU69154 lncRNA upstream 132629 19873092 ~ 19873535 (+) False slc6a11a
TU69224 lncRNA downstream 893 20007703 ~ 20007977 (+) True G46733
TU69226 lncRNA downstream 1285 20008095 ~ 20008583 (+) True G46735
TU69249 lncRNA downstream 9755 20016565 ~ 20016863 (+) True G46750
TU69250 lncRNA downstream 11505 20018315 ~ 20018679 (+) True G46751
TU69251 lncRNA downstream 12019 20018829 ~ 20019302 (+) True G46752
XM_043241478.1 mRNA upstream 204 20004804 ~ 20005960 (+) True c6h1orf74
XM_043241476.1 mRNA upstream 7036 19995035 ~ 19999128 (+) True ruvbl1
XM_043241365.1 mRNA upstream 23421 19977071 ~ 19982743 (+) True gata2b
XM_043242636.1 mRNA upstream 33731 19966623 ~ 19972433 (+) True si:ch211-157b11.8
XM_043242314.1 mRNA upstream 77820 19922524 ~ 19928344 (+) True slc26a6l
XM_043242927.1 mRNA downstream 20117 20026927 ~ 20038497 (+) False eif4enif1
XM_043242928.1 mRNA downstream 20182 20026992 ~ 20038497 (+) True eif4enif1
XM_043242929.1 mRNA downstream 20183 20026993 ~ 20038497 (+) False eif4enif1
XM_043242930.1 mRNA downstream 32384 20039194 ~ 20050026 (+) True patz1
XM_043242932.1 mRNA downstream 32392 20039202 ~ 20050026 (+) False patz1
TU69089 other upstream 219867 19784177 ~ 19786297 (+) True ghrl
TU69007 other upstream 424340 19580489 ~ 19581824 (+) False itpr1a
TU69008 other upstream 424340 19581196 ~ 19581824 (+) False itpr1a
unassigned_transcript_1265 other upstream 853991 19152102 ~ 19152173 (+) True trnaq-uug_14
TU68431 other upstream 1417717 18577278 ~ 18588447 (+) False atp10a
TU69241 other downstream 80281 20087091 ~ 20095641 (+) True G46742
TU69535 other downstream 625186 20631996 ~ 20637951 (+) False LOC122346811
TU69537 other downstream 718917 20725727 ~ 20749398 (+) False LOC122347404
TU69951 other downstream 1768598 21775408 ~ 21777713 (+) True G47187
TU69952 other downstream 1769124 21775934 ~ 21777713 (+) False G47187

Expression Profile