RNA id: XM_043242355.1



Basic Information


Item Value
RNA id XM_043242355.1
length 486
RNA type mRNA
GC content 0.42
exon number 3
gene id tomm6
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19841479 ~ 19842994 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTCCAACCGAGGATCCGTAGCGCGATACTGTTAACCTCGTGGTTTGCCGTAGAAAGCTCAAGGTAATATCAAAGAGCCTTTGGCTTGCTTGGAAATTTATCTACAAATAAAATGAGCGGAAAGAAAACAGATGGGCGATCAGGTGGTGCCATGGGATGGATAAGCTCAGCTTGCCGTTTCGCGGCGGACAGAAATGATTTCAGAAGGAATCTCCTCGTAAACCTGGGTTTATTCGCAGCAGGTGTTTGGGTCGCAAGAAACCTTTCAGATTTTGACTTGATGTCTCCTCAGCCAGTCACGTAGCTCCCACccagcaaaaaatatatattttaacagGTAGTGGTGAAATGAAAGAACATACATTTTCCACCGAGGGTCTTGTTGAACAAGCCCATTCAACGCTGAAGGGAATAACTATTGGATATTCACAACTGTAGATTTCTTCTGTACTTCATTgtgttttgttgaaataaatatcacacTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69142 lncRNA downstream 4250 19834070 ~ 19838047 (-) True G46673
TU69107 lncRNA downstream 40031 19801243 ~ 19802266 (-) True G46647
TU69118 lncRNA downstream 49969 19791642 ~ 19792328 (-) True G46658
XR_006251216.1 lncRNA downstream 235241 19606362 ~ 19607056 (-) True LOC122347383
TU68953 lncRNA downstream 444567 19393477 ~ 19397730 (-) True G46540
XR_006251200.1 lncRNA upstream 34318 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA upstream 34334 19877328 ~ 19878677 (-) True LOC122347207
TU69310 lncRNA upstream 37244 19880238 ~ 19880588 (-) False LOC122347207
TU69329 lncRNA upstream 56711 19899705 ~ 19956730 (-) False LOC122347177
TU69340 lncRNA upstream 125252 19968246 ~ 19968460 (-) True G46803
XM_043242335.1 mRNA downstream 41728 19795103 ~ 19800569 (-) True crbn
XM_043242336.1 mRNA downstream 41742 19795103 ~ 19800555 (-) False crbn
XM_043242349.1 mRNA downstream 47671 19792750 ~ 19794626 (-) True vhl
XM_043242323.1 mRNA downstream 50847 19786424 ~ 19791450 (-) True tatdn2
XM_043242324.1 mRNA downstream 50999 19786424 ~ 19791298 (-) False tatdn2
XM_043242352.1 mRNA upstream 2356 19845350 ~ 19847432 (-) False tspo
XM_043242350.1 mRNA upstream 30979 19873973 ~ 19875768 (-) True ppil1
XM_043242312.1 mRNA upstream 56678 19899672 ~ 19905235 (-) True LOC122347177
XM_043242341.1 mRNA upstream 62857 19905851 ~ 19908068 (-) False LOC122347195
XM_043242340.1 mRNA upstream 62857 19905851 ~ 19908065 (-) True LOC122347195
unassigned_transcript_1266 other downstream 175791 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 286366 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 286366 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 692567 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 786166 19055146 ~ 19056131 (-) True G46478
TU69304 other upstream 50 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 253395 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 318446 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 686185 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2896978 22739972 ~ 22750947 (-) False tardbpb

Expression Profile