RNA id: XR_006251200.1



Basic Information


Item Value
RNA id XR_006251200.1
length 608
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122347207
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19877312 ~ 19880588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TAGGAACAGTTTCTTCGCTTCAGGAGCTTTAGGAGATTGTGTTCCTTCTCATGCTTGAGACTCCATTACTATTGTCTGTGCGTCTTCATCGGGTACCTTCAGACCGGTTCGAGTGGTTTGGCCTAACGTGGAATGAGCAAACATACCTTTAACAAGTGGAAGGAGCAGGAAGTGATCTTCTTCAGCTAAAGCGACGCTGCGACACAATGGCATCTCTTGTCTGGGACTCCATACTGAATGACGGCACCAGGAATTCATAGGTCACATGACATCAGACACTTTCTTCTGGCTCTCAGCTGCAGTAAAATCCTCTGATTTGTGTCTTACCAGGCAAGTTTAGATGTTGATACTCTGTCTAATACTGCCTGGTAATGCCATCAATCACAAGGAATTTGATCAccatttttccttttccttcctTACCTACACTGCCGCAatggaattgttttttttttttttaaataattaaacagtgtttggagtcttaataaaaataataaaggttttaaaatgctgtacCTTATATGTATTGTTTAATTGTATGTCTGCCTATTTTGCTCCATGTACATTATTGTGTATTTTGGTCAATAAATGTGAATTACAATCAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU69300 lncRNA downstream 34345 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA downstream 34345 19841841 ~ 19842967 (-) True tomm6
TU69142 lncRNA downstream 39265 19834070 ~ 19838047 (-) True G46673
TU69107 lncRNA downstream 75046 19801243 ~ 19802266 (-) True G46647
TU69118 lncRNA downstream 84984 19791642 ~ 19792328 (-) True G46658
TU69329 lncRNA upstream 19123 19899705 ~ 19956730 (-) False LOC122347177
TU69340 lncRNA upstream 87664 19968246 ~ 19968460 (-) True G46803
TU69356 lncRNA upstream 118050 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 174284 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 220064 20100646 ~ 20102453 (-) False srsf3a
XM_043242350.1 mRNA downstream 1544 19873973 ~ 19875768 (-) True ppil1
XM_043242352.1 mRNA downstream 29880 19845350 ~ 19847432 (-) False tspo
XM_043242355.1 mRNA downstream 34318 19842297 ~ 19842994 (-) False tomm6
XM_043242335.1 mRNA downstream 76743 19795103 ~ 19800569 (-) True crbn
XM_043242336.1 mRNA downstream 76757 19795103 ~ 19800555 (-) False crbn
XM_043242312.1 mRNA upstream 19090 19899672 ~ 19905235 (-) True LOC122347177
XM_043242341.1 mRNA upstream 25269 19905851 ~ 19908068 (-) False LOC122347195
XM_043242340.1 mRNA upstream 25269 19905851 ~ 19908065 (-) True LOC122347195
XM_043242344.1 mRNA upstream 30412 19910994 ~ 19913842 (-) True c6h1orf159
XM_043242345.1 mRNA upstream 30412 19910994 ~ 19913825 (-) False c6h1orf159
TU69304 other downstream 29914 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 210806 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 321381 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 321381 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 727582 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 215807 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 280858 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 648597 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2859390 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2859390 22739972 ~ 22750947 (-) False tardbpb

Expression Profile


XR_006251200.1 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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XR_006251200.1 Expression in each Bioproject

Bar chart with 2 bars.
XR_006251200.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.