RNA id: XM_043242312.1


Basic Information

Item Value
RNA id XM_043242312.1
length 3651
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC122347177
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19899672 ~ 19956730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGGGCCCCTATCTCCCACACATAAGGGCACTGGGGTTTCTGAAGGTGTACCATGCCAGTGTCGGATCGACATTGAAGTGTTTCGAAAGCCTAACTAACAACAAAAGatGTCAGAACAAACCTTTTAAGCTCAACTGCAATGGATGACTTAGACCACAGTGTGCTGATAGCAGAGCAGGACTGGGACTGTTTCTGTACAGAGAGTGAGGAATGTTCCGTTCAGCAGGCTACGCTTGCAGCTTTAGATGAGTCTGGCTTCAGTGACACTGACGATGACAAAACCTTTGTCCATGTGTCATCTGTTCCCACCCAGACCAGCCCTGACCAACTCTGTGAAGAAAACAGCATAGAAGGACAAAAGCAGCATCAAATAGGAGAATGTATATCAGAACATAAATCTGAGAATTCAGAGTTTACTGAAAATCCTAGTCCTAATACAGAGCCACGGAATACCAGGTCTGCTGATCAGATGTCTGATGCTGGGGCAAATGTATCGGGTGCTATATATGAAGACAGCGATCTGACTGAGAAATTAAACTTAAGAGGAAATTGTGATGAGAATGGTGCGAATAAATCAAGCCAAGCCACAAAGCTTTCTGAAATGTCTGTAGAAgtagaaaacaatgaaaagagTATAGAAGATATAGAAATGTTAACTGAAGCGACAGACTGTTCAACAGTggccaaaaaagaaaaggaacgTTGGTTTGTGACTGTAAATGACAGCCCAGTCCGTCTGAGAGTAAAGGATcccacctcaaaaaaaaaaagaagaaaaaaaaaaactaaaaaattcaGACAGAATACTGGAGTGATGGAGAAGTGCTCTTCCTTAAATAACAATACAGAACCAGATGAAGAAACTACTGAGAGACAAATAACGCAGGAGAAATTCGAAAGAGAAAATACTGATTTTTACCCAAACGATATTCAAAGTGTGCTTCATATACAAGATATTAATTGTATTTCGCTCACTGGATCATCGGAGTGTGGcgagaaaaaaacaagctgtCCTATTAGTCTGAAAAAGGAAAGCATAACAGAAATGCCAGAAGCAAAATTAGAAAGAAATCCTGTTGACTCTCTAAATTCACTTTTAACCAAACAAATGCCACAGACCATATTTAAAGACCTCACTGGCTCACTGCCACAGTACTGTGATCATGAAAGCGCAGTGCGTGATAAATATGACAAGTCCATAGTAGAAATTAACTGTGAATGTCAACATGCAAATGATCATTTAAGCATCAACACAGAGATCAAAAATCCCAGGTTTATTTTAGGTGTCTCTAACCCCCCTGCTCTATCAGCTGCTGAAGAAGAAAATACAGAACATCAACAAACACAATCCTCCAGTAGCAGTGCAAAGACTTTAGGTCCAACTCCACCCATATTTGCCATTTCCTCCTTTTGGGATGAAATGGAAAAACTGacaataaatgatattttgcaACTTAGAACAGCCAATACCAAGAGAGAAATGATCATTTCAGAAGAAAACAGGCCTGTGGTCACTGTCAACGCTCTTCCTCTAACTAGAggtgaggtggaatataaagaTGATggtttggaagatggcctggtagACGACGCAGCAGATTCAGACTATTTCACACATTTGGATGACTCTAAACCAGACCGATCGAGCTGTGAATTCTCAACTTTCTCTGATTTCGATGAAGAGTTTTTACAACTTCTTCATGCAAGTGCTAACCCTAGCCCTGAACCCCTCGAAGGCAAAGAACAAACCCAAAGGTTTCTTGAGTCTAGCATGGATTCAGAAGAAACTTGGCGGAGTGAATCAAATGAGATGGTGAAGCTGTGTCCTGAGAATGATCCCTCGCTATATTTGTATTCAGAGTCAGAAGCTGAGATGCAGGACATATTTCTAATAGCTAAAGAGGACAGGAACATGAATGCCTTTCTACTGGACCACTGTAGCACAAGGAGATCAACGCCTTCACCAGTTTTATCGATTTCTGATATTCTCGACAATCACTGTCTGCAGACTTTCTTTGAAATCTTGAGAAGTGACACCGAAGTAGAGCAACACCAGACTTGGATCCCAGATAAAAGCACTTCgctttgtttttcaaagaactTATCTGTGGCTGAGACTTATGATGACTTTTTCTCAGACTTGAAGTTGGgattttcttttccttcaaTTCAAGTTTCGACAAAGAATGAGAAATCATTAGTTCCTATATACTCCTCTTCTCATTCAGTGGTGCAAGACCTAGAATATCCAGAGGTAGAAAAGGTGATACCATTGGACTGTGAAGACGAGAGTGCCCCAATCCAAGTTATGAGTTGTGCAAGGCCCTCTAAAACATCAAACATGTGCTTTATCACTAGTACCTGGAGAAACCTTTCTTTGAGACGCACCAAACTTTTAATGGGAAGGACCTGGTATAGGATGGCCAACTCTTGGGGTTTTCCCAAGACAGCTGAAACAGTCTACGGTTATAGAACCGGAAGTTCTTCTATAGCTCAGAAAGCTTTCAGACCTTTTCTAGAGAACCAGGCCCTTGGTCAAATGACAGAACATCAGATACGTGTTGGGACAACAGTCGCAGATGCAGATAGAGATTGCTTCcttttttcattaaagcaaACAGATATGTGTCTTGTTTGCATCGCTTTTGCATCGTGGGTACTAAAGTCAAGCAACCCACAATCTACAGACATGTGGAAAGCAGCTCTTCTGGCAAACGTGAGCGCGATATCTGCCATCCAGTACTTGCGGCGATACGTAAAAGAAGGATGAACCATAAAAATCTAGTATTAGAGCTTTCTGAGGATTTCTCACAAGGGGCCAGTGTACAGGAAATGGTTAATTTTGCACAAATTCACAACAAACACTTTAGTAAATACACATATTAGATTGTATTCCATATTTACTAACAGtctaatattttcatgtttaatatatCCATGTTACAAAATAGGTgttcaatcaataaataacttATCAAAGGACAATTTTGTTAAAGAAAAGCATACAAAGCAAAGGAGGaaacattagtttttttcccGTACAAACACTTGTTCAGTTAGAAGACATATATTGCTTTAGATATTATGTTGATATGGACCAGAAATGACAACTGGTAAGTTTTGCGTCAGTTATATTCAGGACTCAAGCTGTgctatacatatttatgtaattcacAAGTAAACTATTTTGCagtgtacatataaaaaaaaaaaaaaaaaaaaacattttcaatgatAATCACTCTAGATGTatctattaaatgcaaaaacatcatGCGGccaaagcttaaaaaaaaagttcatataGTTTTTCAGTGAAGAAACCAATTTAAGCACATTTCATGAAGAATATAAATTTGCACATAAAATATAGTTGGAAGTTAAGGAGGTATCAGAAAGCGCCAGAAAAATATGACTGCTGCTGAAAGTCAACTATTTCTATCACACATAAGCGAAGACTGATGTCAGTGtgatacatgtatataaaatagCCTCAAAAATTGTGCttacaaaaaactaattaatatatactaaaagaaaatgtactaacgaaaaaaattctaaagatCTGAGTTCATGTGTTAATGGATGAGTAAAAATGATTCAAGCTGTTTGAAATAATCATGCATTTatcactgaaattaaaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69310 lncRNA downstream 19084 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 19090 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA downstream 20995 19877328 ~ 19878677 (-) True LOC122347207
TU69300 lncRNA downstream 56705 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA downstream 56705 19841841 ~ 19842967 (-) True tomm6
TU69340 lncRNA upstream 63011 19968246 ~ 19968460 (-) True G46803
TU69356 lncRNA upstream 93397 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 149631 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 195411 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 222713 20127948 ~ 20129839 (-) True G46836
XM_043242350.1 mRNA downstream 23904 19873973 ~ 19875768 (-) True ppil1
XM_043242352.1 mRNA downstream 52240 19845350 ~ 19847432 (-) False tspo
XM_043242355.1 mRNA downstream 56678 19842297 ~ 19842994 (-) False tomm6
XM_043242335.1 mRNA downstream 99103 19795103 ~ 19800569 (-) True crbn
XM_043242336.1 mRNA downstream 99117 19795103 ~ 19800555 (-) False crbn
XM_043242341.1 mRNA upstream 616 19905851 ~ 19908068 (-) False LOC122347195
XM_043242340.1 mRNA upstream 616 19905851 ~ 19908065 (-) True LOC122347195
XM_043242344.1 mRNA upstream 5759 19910994 ~ 19913842 (-) True c6h1orf159
XM_043242345.1 mRNA upstream 5759 19910994 ~ 19913825 (-) False c6h1orf159
XM_043242327.1 mRNA upstream 12818 19918053 ~ 19921278 (-) True kbtbd12
TU69304 other downstream 52274 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 233166 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 343741 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 343741 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 749942 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 191154 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 256205 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 623944 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2834737 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2834737 22739972 ~ 22750947 (-) False tardbpb

Expression Profile