RNA id: XM_043241480.1


Basic Information

Item Value
RNA id XM_043241480.1
length 1124
RNA type mRNA
GC content 0.37
exon number 3
gene id mustn1a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19998632 ~ 20000638 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGGGATTGGACTCTGCAAGggaagggtgtgtgtgtgtgcaatcaTAAATGCATATACGACCAGTATAAAACAGAAACTTCAGCGAAAACGTAGGACTGATCATGTCTCAAGGTGAAGAAGAGGAAGTTAAGAGGCCTGAGGTAAAAGCAGAGGATTTGATTGGAGCCAGGGATAAACTGGCGTCTGGAACAGAGGTGAAAGGCAAGACCTTTGAAGTGATGCAGGAATGCGAACGAGCTGGGAAGGTCGCACCATCCATCTTCAGCAAAGCTCGCTCAGGATCTGAGACTGCCTTTAACAAACCCAGCAAGAAAAAGTAATACTATGGAAGCATAATTTCACTAAATCATACAGCTGAAACATGTATTTATGGATGAATAAATTGAATAAGCATAAACTAAACAATCAAAAAACTTTGAAAAttgtaaacaattaaaactaaattcttttttttaaactgcacaactttttgtgttcagtatTTACTAAATTTATACAAAAAGGAAATACACCACgatccattttccaaaccatGTTTTTTGGCCTGGCTCGAGTACGTATCACGGTGGAGTAGCTCTGTACCTGCACGACTCGTCATAGACGTAAACAGAGAGAAGCTCCGGCTACAAATGTTATTCCGCAAAACGCACACAGTTCTGTTTAATAACCGTTGAGCGCCAAAACAGTTATAGACTGCCGCTTCAAATATTCCTGAATgcaagttgtgtgtgtgtgtgagaacaatTAATAGTGAATACATGTATCATTTGGTTTATACATCTTTTGGTCATTAAAACGTCccatttatatttcacattattataaaaaaaagatttattttcaaaacaacacaaaaatgaacaGCTGACAGGACACTGGAAAACCTACCCTACAGGATAACAAAAGTGGGATAAAACTAAGGAAATTAAATTGTCTAAgcatgttaattattaattattgagaGAATGTTTTCTTTCCCGTTCTTTTTGCCTAACAAATGACACAATAAGGTAGAACAATACATTAGCTGTGCACTGGTTTAAAACAACTGTCATACTGTTATAATATTGTGACAAGTGTGAACTAAACCAATAAAGCAAACTAAAGCAGGCCATTCAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69340 lncRNA downstream 30349 19968246 ~ 19968460 (-) True G46803
TU69329 lncRNA downstream 42079 19899705 ~ 19956730 (-) False LOC122347177
TU69310 lncRNA downstream 118221 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 118227 19877312 ~ 19880582 (-) False LOC122347207
TU69354 lncRNA upstream 54240 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 100020 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 127322 20127948 ~ 20129839 (-) True G46836
TU69403 lncRNA upstream 148921 20149547 ~ 20152787 (-) True G46838
TU69407 lncRNA upstream 172912 20173538 ~ 20174291 (-) True G46842
XM_043242891.1 mRNA downstream 4137 19988919 ~ 19994672 (-) True eefsec
XM_043242637.1 mRNA downstream 32385 19965403 ~ 19966424 (-) True LOC122347402
XM_043242356.1 mRNA downstream 33988 19961196 ~ 19964821 (-) True arpc4
XM_043242357.1 mRNA downstream 39152 19949312 ~ 19959657 (-) True LOC122347206
XM_043242332.1 mRNA downstream 64384 19928355 ~ 19934425 (-) True p4htmb
XM_043241475.1 mRNA upstream 474 20001100 ~ 20004685 (-) True rft1
XM_043241477.1 mRNA upstream 5428 20006054 ~ 20009354 (-) True sirt4
XM_043241473.1 mRNA upstream 8888 20009514 ~ 20016235 (-) True zgc:172271
XM_043241472.1 mRNA upstream 15920 20016546 ~ 20025871 (-) False sfi1
XM_043241471.1 mRNA upstream 15920 20016546 ~ 20025871 (-) True sfi1
TU69304 other downstream 151411 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 332303 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 442878 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 442878 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 849079 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 95763 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 160814 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 528553 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2739346 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2739346 22739972 ~ 22750947 (-) False tardbpb

Expression Profile