RNA id: XM_043240967.1


Basic Information

Item Value
RNA id XM_043240967.1
length 5600
RNA type mRNA
GC content 0.45
exon number 14
gene id raver2
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14523682 ~ 14583001 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAATATGCTGTTGCTATCTTAACTTTGCATCTATTGCTATTATTTTGTAACGCGATACTGTCCTGTTAAGACGGGGAACGAGACGAATAGTCAGAACGTGTTTGGTTTTCCATCGGTGGAGGTCGCCAGCTGTACTGTGCCGGGGCTCGTCCACACTTACTTTCAAGAGTGCCGTCGATGGGTTTGACTCAAAGCACAGACGCCCACCTATCCGCTCTCTCCGACTCACTTTCCACCGAGCGCTTCAAAATGGCGGCCGCTTCATCCATCCAGCCGCCGAGCGTGCACGCGATAAAGCGGGAAAATTCACCTCACCCGGAGTCCGACAGCCCCGCGAGCCGACAGGAGGAGGACGCAGCATCCGAGGGGACCGCCATCCTCAGAGATCTACCGGAACTTGATGCCGAGGAGATCGAGAAACGGCTGGAGAAAACTCGCAGAGAGCTGAGCAACAGGAGGAAGATCCTCATTAAGAACCTGCCACAGGATACGACCAACCAGGAGGTCCATGAAATTCTACGCGAGTACGAGCTCAAATACTGTTTTGTGGACCGGAACAAAGGAACAGCTTTCGTAACCCTTCTAAATGGCGACCAGGCACAGGATGCCATCCGAACTCTGCACCAGACATCAGTCCGAGGCCGTGACATCACCGTCCAGCTTCAGCCTACGGATTCGCTCCTGTGTGTCACCAACCTGCCCTACACTGTCGCTGCCGGACAGTTTCAGGAGCTGGTGCGCTCCTATGGCAACATTGAACGCTGTTTCCTGGTGTACAGCGACCTTACCGGCCACTCCAAAGGCTACGGCTTTGTGGAGTACATGAAGAAGGACTCAGCCTCCAGGGCACGGTCAGAACTCTTGGGCAAACCGCTGGGCGACCGTGCACTCATGGTGCAGTGGGCTGACGTCAACCAGCTGACCTCTGCTGACCACCTCCACTCAAAGTGCCTATGCGTGGATCGCCTGCCGCTAGACTTTGAAGACTCGGAGGAGCTGGCGCACATTTTTTCAGAAAGCTACAAACCCGTCTTCTGCCAGctgGCTCAGGATGAGGGAAGTCCAGTGCGGGGTTTCGCTGTGGTGGAGTATGAGACAGCGGAGCAGGCTGAAGCCGTTCTGCTGGAGATGGACAGACAGCTGATCCAGGGTCAGGAGATacgtctgtctctctgtcctccGGGAACCTCTGGACGCAGCACTCTCGCCGCCCTCATCGCTGCTCAGGGAGTGATGTTGAGCAATAAGAAAGGTTTACTGCCTGAACCCAATCTGGCCCAGTTCCTCAACAGTATGACCAATCCTGCTGCTCTCCAGGTCCTTATGAGACCCTACCCTACTGCCAAACGAGGAGGAAAGTTTGGTCGACCTCACAATCTCCCCTTCCTGCGTCCACCATTGACTGCAGCGCTGCTACAGTTAGGAAAAGCACAGCAGAGCGCCATCCTAGGAAACGGTCTTGTTCTTCAGAATCTTCTTCACATGCAGATGGCCCAACAACAGCTCTTACAGATCAAAGACAAGCAGATCCCTAATGTCCCAGGGCTTTTAGGCGACCCTTCCCGGCTGCTCCTGCAAAAAGTTCTGGGTCTTCGAACTCCAGCACCAGTTCCTCTGGGGAAAGGGTTGCTGGGTGATTCTCCCACAGAGCTGGGCCAAGACTCGTCTCCAGTCACGTCCCAGGGAAACTCTGGGGCTGGAATGGTGTCACATGTACCTGGACGTTCGCACGCCAGTTCCATTGCAGAGCAGAACGGAGTCACTGTGACATGCCTGGCTCCGGAGAAACAGCCTGCACCTCCAGGAACCACAGGAGGCTCTGTAAGCTCCCAAACACAACTGCAAAACTTCCTCCCCGGAATCAACGCACAAAGTCTGGGGCCTTTGCTGGGCAGTACAGCGCACAAAGTTCCAGCCAACCACCACAGTTCGAGCGTGCAGACTAATACGTCCGTTACAAGTCAATCCAGTTGTCAGACGTCTCTGTTGGGAGACCCCCCTAAAGAAGTGAAGTTGCCTTCCAACCCATATCTAAACCTGGCTAGTGTGCTTCCTGGAGTGGTACTACAAGCACCCTGCAACAGTAAATCTCAGACTGTGCAGACACACACTGGGACGTACAGCGCAGTCCTGCCACCTGCCACCCACCCACCCAGTCAATACAGCACAGAGACCACTTCTGCAGAATACACTCACCAATACACTCAGCAATACACACAGGAGACCATGCAGCAGTGGTACCAACACTACCAAGCACAAACCTACGGCAATACTAGCCAAGAGACAGCTGCAGTCACTGAATGCACAAAAGAACAACCTCAGGTGGTGGTCACCTCCTCATACGGAGACTACAGTTCTTACATGCATGCTGTCAGTCAGTACTATTCTCAGACACAGATGACCCAGACAGCTGCTCAAGTCTACCAGCAGCGAGATGTCACCAAgAGTCAGGCTAGAGGACAGAAGCGAGAATACCCCACGCTGCccacacaggaagtgacatcagaGGGGCCGTACGTGGGCCAGCACTCGCAGGGTCTTGGGGGCCAGTACGCCGACTACTTCAAGAAGAAGAGGATctaactctctctctcgttGCTCGCTGTGTGTCGCCCTCGTCGTGTCCAGGCCTTAACTTTTAGTCGACAACCGATATTTATGAAAagattgtacattttaagtgtgCGTTCCTCTTCTGTGgatgttgttgttatttctgTCCGACGCCAGGCAGGACGTCTTAAGGTCGCTCTGACTCTGTCCCGAATGATCTATTAAGATAATtgatatttctctttttctgttctgcCTTTTTACCTCTCTCCCAGGCGGGACGTACCATTCCACTCCAGAGGTGGGGGGGTCTGTGTCGGTGTTTTACTGTACAAACGGCTAAGGGCTGATAAAGATTGAGCTACACTCAGAGAATAACGTTTTTcgaagatgtttttttttttttttgtttgtttgtttctggcAGGGTAGGGCATAGCCAGTGTATATTGTACATTCTGCGAAATGAGTGTATTTTTTACCGTGTACAGACATTgagaatattattaatattaacgtCTCGCTTAATGTGTCACTGTTTATCTTGACTATCGTACGGGAAACGCGTGTTTGAGGATTAATCTTTAACGTGTGTCTCTGTACATACTGCTGTATCTGTAGGAACGATCAGCCATTTTGAAAACTGCAGGAGCCTTAAATCATGGCGTTCAGAGAAGACATGGCTAAGGCAATAACTTCTACCTTCTCTGGAGAAACTACCATCATTTACATCAAGGTGACTTTTCCCCCAGGTGTCTGCGGGGTGACCTCCGAACAACTTTCAGCTACAATGCTGCCAGTGGTTGCTTTTTTAATAACAGTGTGagtaataataacacattagtatagtagtagtagtagtagtagtagtagtagtaataatctGCTGGAAGGATGTCAAGGGTTGGAGTGGTTATGTATTGGATAAAACAGCCCTGATGCAAACACCCACATGGTAATAATCTAACATAATGCCTTTATATGGATATTAGTGCTCTGTTATTCTGCGGTTTAATCTCCTTACTTGTTTAAAGGAGAGAGTCTGTATTTTGATGATTTtacgctgcaaaaaaaaaaaatcctgtttttaattcatatcAGTCTTTTTTGATTTTGCTAAAgtatatgttaaaaaatgtaaatacactaGAGGCAAAATAAGTTAGATATTAATATAATCTATGTTGAAGTTGTCGTCTTAAATTAGATACTTTAAACAAGTTACATGAATCTCCCAATGGgacaaataaagttttaaagagatagttcaccaaaTCTAAGGAttcaaaattatgatttttattatttactcatgttgttctaaaccatTACAACTCaacaggtatatatatatatatatatatatatatatatggtacaCATTTATAACCAATAACTTGTAATaaccaataatattttttgcagttcTAGTTAAGTTGCTGGTAACTGCTTTATACAAAGTCAATGAGATCTAATTCAGTTTTAGATCccattgacttttattgtagcctatacagaaaaaaaacagttttttaaaaatgtcattattattaggTTGGTAACAAGGggatacattatttattaaaagtgttttttttttttaattttcagatgaactatccctttttaCTTTGCGCCGAGCTTGTTTTAAGCACGTTTAGGTGTTATTAGTGGTAAATAAGACAGGTAGGCATTAAGAACTGGATTTCTTTTTGCAGTACACTGTGTCGGTTGCAGTCTGCCAGCAGATTGTCCTAAAAGGAGCCGTTGTTTGGCTTTGCTAGCACATCGCACATGCAGGCGTTTGCCTGGCGCGCTCATCCGTTTATGATTAAGGCCGTGTGCCTTCTTTTTTCTACTCTTTTGAAGTGCTCGTCTCTTGGTTGTTATCTCTCTGAAAGCCATTCTCTCACCTCCACAACAGACTGACAACACATTTGAGGAGGAGCCTGTTATTGCGTCCTATTTATGttgcctttttgttttatgacaaaGTATAAAGACAATCCCAAATTGCCATCGGTACCTGAGGCTCCGCGTCCCACTTTCAGCACAGAATCACCATTTATAAAACACAGAGGCCTTGTTTTCCAGGAAACACTAGAAAAGGTTAAGAACAAAATGTTAAGACGTGAGCATTTTTAGTTTCCCCCGCTGTCCTGCGAGCTCAAGTTGGGTTCGAACGCGTGCTGCTCGTTTCTAGATAATAGGAAATGGGATTCGTTAACAAAAGGACACTCTACAGGGATTATAAAGCACATACACTTCTGGTCACCTTCCCATGAGTCTCTGGTTCTCCAACACTGCTCCAAATCAAGCAGACTCAACACTTTCACCTTGAAAAGAGAGGTTCGAGTTACTACATAAAATTTAACGTCTCTTTAAAGTGTTCTCGTTTCTGTAGAAAGGTGAAGGACAATTGTGCctattttgcttttatgaaCTTTGTATTTCTTACCATTTTTGCCGACGTTCCTCCCCTCGTATTTCAAGTCCCGACTGTAACGTATCTTTCAGATTCTGCACTTTTACCCCTCTGAATGTCATGAACGTGTACGTGTGCGCTTGTATCTCAAAGCTTTGCAATACTAAAGTGTGTCTTATTGATGTAGAAGGTACAGTCGCCTGTTCAAACACGCAGGGTTATCAACACTATTGTGCTTTGTACACATATCGCAGCCTGTTTTTAGttgtagttttctttttttttccaccttcaATTAagattttgcaatattttataatcCAAACTCTATTGATATTGCTTTACTGTGAATAAGCTATTTTTAGAAACAGTGGAATTTAAGCATGCGTATACTCCTGCAATacaagaaaaacacttttttttttctttttttcagtagaTGTTTTCGACGCTTTTGAGtatttaacagcaaaaaaaaaaaaaaaactactgtatttattttatgtgaatttatgtacattttaccCTGTTGGATACAATTTTGTTGTCATTCTTTTTGAGGAAAATAGGTTTGGGTTTTGGGAATTGTTTTGCATTCCACATTAAAGGACAGGAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67022 lncRNA downstream 29660 14493121 ~ 14494022 (-) True G45277
XR_006251154.1 lncRNA downstream 244653 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA downstream 244653 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA downstream 244656 14263867 ~ 14279026 (-) False LOC122346673
TU67012 lncRNA downstream 244656 14263867 ~ 14279026 (-) False LOC122346673
XR_006251130.1 lncRNA upstream 68715 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA upstream 68715 14651716 ~ 14656031 (-) True LOC122346442
TU67118 lncRNA upstream 322501 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 519689 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 602151 15185152 ~ 15239640 (-) False G45543
XM_043241216.1 mRNA downstream 31216 14485606 ~ 14492466 (-) True ak4
XM_043241214.1 mRNA downstream 31892 14485606 ~ 14491790 (-) False ak4
XM_043241217.1 mRNA downstream 33516 14485606 ~ 14490166 (-) False ak4
XM_043241211.1 mRNA downstream 38202 14458989 ~ 14485480 (-) True dnajc6
XM_043241210.1 mRNA downstream 43016 14458989 ~ 14480666 (-) False dnajc6
XM_043242887.1 mRNA upstream 4269 14587270 ~ 14642988 (-) True cachd1
XM_043242953.1 mRNA upstream 74883 14657884 ~ 14757952 (-) True ror1
XM_043242954.1 mRNA upstream 74883 14657884 ~ 14692231 (-) False ror1
XM_043242115.1 mRNA upstream 179710 14762711 ~ 14769897 (-) True pgm1
XM_043242114.1 mRNA upstream 187981 14770982 ~ 14780729 (-) True efcab7
TU66983 other downstream 330516 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 842408 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1055743 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1056117 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1056456 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 745966 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1020909 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1475967 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1476892 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1778199 16361200 ~ 16364020 (-) False fam183a

Expression Profile