RNA id: XM_043240970.1


Basic Information

Item Value
RNA id XM_043240970.1
length 3576
RNA type mRNA
GC content 0.48
exon number 8
gene id brinp3a.1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16898685 ~ 16926368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCCGACATACGCGCAGTTGCACAGAGTGGTCCTCCGGAGTCTACGTTTATTTAGTGCTTCTTGGACACCAGGTTAAGTTAATGTGTCTGCCGAGGGGAAACGGTAGACTTTAATCGCGTCAGTCGTTAAAGGTTATGGGATTGCTTCACCGTAACTTCAAATTCATAAGAGACCTGTCTACCTGGAGAGAGAAGAGTGAAGACAGAGCGACCGCGAtagttttttcttctcttcaccCGGATTATACGCCACAAGACGTTGGAAATATATTCGCTAGCGGAAGCAGAGAGTTGGATGCTGGTTTTCCAGGGCTCTTCTCGCTTCGCGATGGTGTCTAAAACAAGTTGAACTGAGCCAAATTTTCAAAGGTCACCCTCAACAGTCTCCCTATGATTTGCTTTTAACTATAGAACTGTAGAGGTTGACTTCAGTGGCAGAAACATCGGACACCTGGAGAAGAAGGCGAGGAAAGTTTGGAGAGAATGTCGAGTCGCAGGGTGAAGCATGAGCTGCCAGTGTACTGATTTTAGACTGGCGTATCTGATGAGTCTATGGGTGTGTGTTGTACTAAGCCTTCACTGCTGGGTTCTAGCCCCTGTGGCAGCCTCCCATGATGCCGCTGGTCCATTTGGGTGGCTCCTTTCAGATAAAGGGCCTTTTCATCACTCACAGGAATTTGCAGAATTTGTGGAGCGTTATCAGCAGGGCTTCACAACCAAATATAAGATTTACAGAGAGTTTGGGCGCTGGAAGGTGAACAGCCTGGCTCTGGAGAGAGAGGACAATGGCGTGGCTCTACCCCTCGATCCAGAGTTCATGCAGACCATCAGACAGTTGGGCCGCAGACCCACCCTCGGTGCCATTACCGAGAACATCATCAGGAAATATGGCACACACTTTCTGCTTTCAGCTACACTCGGAGGTGAGGAGGCGTTGACTATATTTGTGGACAAGAGGAGGCTAAGCCGGACGGCGGACCTGACTGACTCAAATGGCACGGCTGTGACTCTGGAGGCCCTGCACCAGCTGGCTGCCTCCTACTTCATAGACAGAGAGAGCACTCTGCGCAAACTGCACCACCTCCAGATTGCTTCCACTGCCATCAAGGTGACCGAAACAAGGACAGGCCCTCTTGGATGCAGTAACTATGACAACCTCGATTCTGTCAGTTCCGTTTTGGTTCAGAGCCCTGAAAACAAGATTCATCTACAAGGGCTTCAGGCCATTCTGCCAGAATACCTAAGGAGCAGATTTGTGGAGGCAGCTCTCAGTTATATCGGCTGCCACTCcgagggtgagtttgtgtgccgGGATAATGACTGCTGGTGCAAATGCAGTGTCGATTATCCCCAGTGCAACTGTCCCAGTGAAGACCTGAAGGCTATGCAGGACAGCCTGAAACTCATCAGAGAATCATGGGTGCAAGCCAACCAAGAGTTTGAAGAGTCTGAGGACTTCCAAAATTTTGTGAGGAGATTACCCACGTTCTATGCTCTGAACACATCTGCTGTGCAGTACTTTTGGAAGATGGACCCTGGCGTTCAACAACGCTTTCTGCTGCTGGAGACTAGCACTCAACAGCTGCTCAGCAAAGCGCAGCGGATTGTCGGCAAACTCTTCAAACTCAGCAAAAGGTGTCGGACTCAGCCCAAAATATCTGTGCTCAGAGAGAGGCCTCTCAGCTACTGGCTGAGGTATATCCTCTCCATCATGTACTGCAGTGAGAACAATCAGATAGGCTCCTACATGGAGGAAACCCGGACCTGCTCCTGTCATTACGAGCACCCATCCTGCCAGGGAGTTATTCCGTGCTCCGTAGGCGACGGCCCTCACTGCGCCTCCTGCTCCTACGAGAACCGCTCTCGCTGTGCCAGCTGCAATCCCGGCTACATGCTGAGCCAAGGAACCTGTAGGAATACCATCCCGGATTCTACCGACAACTACATCGGGTTCGAGACGGACCTTCAGGACATGGAGCTGCGCTACCTGCTGCAAAAGAAAGACGGGCGGATCAGTATTCACGCCATGTTCATAAGCAATGACGTCAGACTCAACAACTGGTTCGATCCCAGCTGGAGGAAGAGGATGCTGCTGACGCTGAAGAGCAACAAGTTCAAATCTAGCCACGTTCACATGCTCCTAGGGATCTCCCTGCAGATATGCCTTACTAAAAACAGCACCCTGGAACCCGTGCTGTCCGTCTACATCAATCCATTCGGAGGTAGTCATTCTGAGAGCTGGATCATGCCAATTGACCAGAACAATTACCCTGACTGGGAAAGGACCAAGTTAGACATCCCGCTTGACTGTTATAACTGGACCCTGACTTTAGGAAACAAGTGGAAGACCTTTTTTGAGACGGTACACATTTACCTGAGGAGCCGCGTAAAAACGGCATCGGCTCAAGGGAACGGCAGCGTCCATTTTGAGCCATTGGAATACATGGACTCGTCCCGTAACCTGGGCTACATGAAAATCAACAGTATGCAGGTGTTCGGATATAGTATGCACTTTGATCCGGATGCCATTCAGGACTTGATCCTGCAGCTGGACTACCCGTACACGCAGGGCTCGCAGGACTCGGCCTTGCTCCAGCTGCTGGAGATCCGAGACCGGGTCAACCGACTCTCTCCACCGGGACAGCAACCTCTGGATCTGTTCGCCTGCTTATTACGCCACCGTCTTAAACTCTCTACCACCGATGTGGTCCGAATCCAGACTGCTCTTCAGGCCTTCAGCGCCAAGCAGCCCAACTCAATGGAGTATGAAACTACCAAACTATGTAGCTAAAAAGCCGCTGCAAGGTAGCAGTATATTTGTAGCTATTTCAGTAACTGTAGTTTAACGACCTGATATACATtcggacaaaaacaaaagcatcgGACAGCTGCTGGGGATACAGTGTTGATGGTGATGCCAGAGTTCTGGTTTGAAGCACTGATGTAATGCGCCACTTCAGAAGAATGGCCAAACCTTttgccttttcttttcttaactGCTATGACGATTTACGGTAACTCATAGCGAGCTCATAATGACCTCATCTCAGTTTCTGCAGAATTTAGCATCAGCCCCTGTCCTGATAAACAATGTGTGCGGTAGAACTCGTCCGGgtcttttgatttttaaaagtgacttttattttcacCTCTTTATTCTCTGCAAGCATAACAGAGGCCGTGAACACATGGTGAGCCAAACCTTGTTAGTGTAATCAGGGGTTCCTGCTGTGTCTGGGCAGAATTCCGACTtcttttagggttttttttcgCCTTTTCTATGCTGTCTGTCAACACTGTAACTCTCAAAAATATCAGTATCCTAATCAACAATAGATGGTTTTGTTGAtgcttaaaactatttttatggtATTCGTTGGAATATGAATGTAGGAGGAAAGCTGTTTAAAAATCTCAACACCATAAGCAAGGTACTTATTATATATGCTGTttcatgtacatttatttttataaaatctatTATTTGTGACAAGTTACAAAGGTAATGTCCATACAATGTATAGAACATTTGTTAATACtctaaataaaagtcatttttatgtgCCGTCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 575880 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 627577 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 629293 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 631143 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 780099 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 261088 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 317312 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 486670 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 588270 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 881253 17807621 ~ 17808115 (-) True G45993
XM_043240975.1 mRNA downstream 68424 16817378 ~ 16830261 (-) False rgs8
XM_043241263.1 mRNA downstream 88888 16807611 ~ 16809797 (-) True rgs16
XM_043242107.1 mRNA downstream 102533 16788677 ~ 16796152 (-) True rgs5a
XM_043241906.1 mRNA downstream 134411 16687378 ~ 16764274 (-) True nos1apa
XM_043241907.1 mRNA downstream 215252 16676285 ~ 16683433 (-) True LOC122346973
XM_043242413.1 mRNA upstream 291619 17217987 ~ 17224910 (-) True LOC122347243
XM_043242414.1 mRNA upstream 309422 17235790 ~ 17246386 (-) True LOC122347244
XM_043242382.1 mRNA upstream 455959 17382327 ~ 17414086 (-) True brinp3a.2
XM_043241039.1 mRNA upstream 627135 17553503 ~ 17555239 (-) True LOC122346427
XM_043241041.1 mRNA upstream 741819 17668187 ~ 17669843 (-) True LOC122346430
TU67937 other downstream 68477 16816640 ~ 16830208 (-) True rgs8
TU67772 other downstream 534665 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 838219 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 838918 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 1293215 15603910 ~ 15605470 (-) True G45606
TU67944 other upstream 260321 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 381447 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 817347 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 817347 17743715 ~ 17774107 (-) True opa1
TU68751 other upstream 1717938 18644306 ~ 18645134 (-) True G46420

Expression Profile