RNA id: XM_043240977.1


Basic Information

Item Value
RNA id XM_043240977.1
length 4037
RNA type mRNA
GC content 0.46
exon number 5
gene id chpfb
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5901138 ~ 5910744 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTCGCCCTCTAGCGAGACAAAGAAAGATCATAAACTTTCCAGGTCAAACGCGGTTTCCTCGCAATATCCTAGGGCAAACGACCAAATTCGCTTTTACCCCTAAATTACAGCTCGAGTTAATGATAGGTTAGTCGCGGTCTTCCAGATGGCGCCTCCTCCGTCCAAGCCTCTGTCGAATGGCGGCAATCAGCGCTTAGAATTTGCATTGACTGACGTCTGGCTAGaaaaggggcggagtccggagCGACGACACGTCAGAAGGCAGCGGAGACGGTCGCGCCTGTCTTTATAGGtgcgaagagagagagagagagagagagagagagagagagagagagcgattcCTCAGCCTCGTTCTGCTGAAAGCATCCCATCGTTGTACTGAAGAGCGACTGAAAGCATGAGAATTGCAATGTTAGTCTCTCTCATCAGGCCGAGCGGGCCGATTATAGTAGGCATCTCTCTGGGATTCACTCTAAGTCTCCTCAGCGTCACCTGGGTTGATGAGTCCTGCGACTCCGACCGGATGGGAGCCGCCGACGAGATGCTCGTGGGGCCGCCTGGGAGCTCGAAAGGGGCCCGTAAGCCTAGTTCGATATCCACCGGCACAACTGACAACGGAAATGTCGACGAGGACTTTGAGCCAAGAATAGTGCGTTATGACAAGCCTGCCCAGGAAGGTCCTCCAAAGAAAGTTTTCAGaGCCAAATATGCCAGCACAGAGCTTGGAATTCGTGAACGTCTCTTTGTCTCTGTATTTACCTCCAAAACCACCATAAGCACTTTAGCTGTGGCCATCAACCGGACCCTTAACCACCACCTGGATGGCAGGCTCGTCTTCTTTACAGGCACTCGCAGTCGTAAACTCCCTAGTGGAATGTTAGTGGTGGCCCATGGTGAAGAGCGCCCGGTTTCAAACATGTTCCAATCTGTCCGATACCTTCTAGAGCATCACATTGCTGATTATGATTGGTTCTTCTTCGTCCAGGATGATACCTACACCCAGCCGGGAAGGTTGAAGACCTTAGTAAGCCACCTGAGCATGGACCTTCAGCTTTACATGGGCCACCCTGGAGAGTTCATTGGAGGTGAGACCCAGGGGAGGTACTGTCACAGTGGACCAGGATTTCTACTCTCCCGTGCTCTACTTCTGAAGCTCCAGCCTTTCTTGGAGCAGTGCAGAACTGACATTGTGAGCATCAGACCTGACGAGTGGCTCGGTCGCTGTATCATTGATTTTGCTGGCATCAGCTGTGTGGAGGAATATGAGGGCctgaattataattattttacgaTGGAAAACAACATGGACCTATCCAGAATGGAGAATGATGGATTCCAGAATGCTCTTACAGTTCATCCTGTGGCAAGCGCCGAACTTGTGTATCGTCTGCACAAACGTTTCACAGAAATAGAACTGCAGAAGACATATGAAGAGATCGAAAAACTACAGTCTGAGATAAAGAACGTCAGTGAACTAGCAGTGGATGGAAACAAGAGTGCCTTGTGGCCCATTGGCATCACACCTCCCTTTGAACCCAAGAGCCGCTTTGAGGTACTCCGTTGGGACTACTTTACCGAAGATAACCTTTTCTCCTGCGTGGATGGAGCCCCTAAATGCCAGCTCAATGGTGCTGATCGAGATGACGTGACTGACGTCATCAAGGTCGCTGTTGAAGAGCTCAACAAAAAATACAACCCTTTTGTACAGCTGAGTGCTCCGCGGCTGGTGAATGGTTACAGGCGTTTGGACCATACACGAGGGATGGAGTACACCTTGGACCTGCAGTTCCAGGCAACGACTGAATCTGGTCACCAGAAATCTATCGCTCGTCGTGTACACCTTGTGCGACCCCTCAGCCAAGTAGAGATTATCCCCATGCCTTATGTCACCGAGGCTACACGTGTCCACGTCCTCCTGCCTCTCACAAGTTCTGACTCTTATGCAGCGCTCCGCTTCTTGGATCACTGTTCCTCCAACTTGTTTGAGACCGGCGAGAATGCAGTTCTTAACTTCCTCTTCACCTACGAACCCGCCGAGGCCCAAAAAGTGGGTACAAAAGATGTCTTTGCAGAGGTCAAGTCTAAGATCGCCTCTGTCGAGCGTAGATATCCCAGCGTGAAGGTGTCTTGGATCAGCATAAAGACTGAAAGTCCGGGTCTCCTGCGGATCCTGGATATTGTATCTAGGAAGCATCCGGTGGAAACCCTCTTCCTCCTGGTCACCGTTGACACTGTACTCAACTCAGAGTTCTTGAATCGATGTCGTATGAATGCCATCAGCGGCTGGCAGGCTTTCTTTCCCATCCATTTCCAAGATTTTGACCCCGGCGTAGCTTATCCAGACAAGGTTCCTCCTGCCACACCAGACCTGGTCAGGGAAGCGGGTCATTTTGACCGAAAAACCTTTGAAGAAGCGTGTTTCTACAACTCTGACTACATGTCCTCACGCACTCGGATGTCTGGGGATTTGCAGGAGAACGAGGAACTGCTGGAGAGCCTGGATCTTTATGACGTGTTTGTGCAGTATTCGGGGCTGCACGTGTTCCGTGCTGTCGAGCCAGCTTTACGGCAGGCATATCGCAACCGGACCTGCGATCCTAGGCTGAGTGAGGACGTGTTCCACCGCTGTCTTCAGAGCACTCTGGAGAGCCAGGGATCACGTTCCCAGCTTGCCTTGCTGATATTTGAACAAGAGCCAGGGAACAGCACCTGAGGAGCTTCCAAACAAGCAATAGTGGGGTAACTGTAGACTGGATGATCCGTAGCAGCACTTCCTCTCCATTTTAACATCTGTCAACCAGTTCTTCAGTAAAAGCTGTTTGACTGAAACCAAAGAGAAACTTTCTGAAAAGAACATTCTGAGACATGTCTAGAGACACCTTTTTCGTGAGCACTTGACTCACAACTGTTAATGCACTACAAAACAATTCATTCACTGTGCTTTTCGGAGTTATTGTAGAATTTTTTATTGCGGCACATTTCTTTAGGATGAATTGccattgtttttgtaattcttCATTGGTAAATGCAATTTACCTCACAGACTTGTGGAGTTGAGCCCTAAGTATACTTCGGTTCTGACAGATGCTAGCATATGTGTACAGCCGAACTTCATAGCCTTTCAAAACAACTTCATTTGATGGCATGCACACACGTTTCAACTTTGTTCAGTATCTGCTCTATTACTTTCTAGAAATTATAACAGataaaaaatgactttgtaCTCACTTTAACTAGAGTTGCGGGAAATAACCTTCTCACACAAGTGGCATCGGCTGTTTTTGCCTTATTCagtattttgttattgttgatCTTTTTTTCCCCGACTGTGAAACAAATGGCCTGGGCCACTTTTGCCACCTCGTGGACAAACtagtaatgcaaaaaaagtaagaCTCTTGTGCATTGTAAGCATACAGAATTAGGCTAAGTTGGGTACATACCTCAAGATAATCTCAAGATTTAGTTTGTGGTCTCTCACATCTTGTTTAAAAATCTTTCAGTGTGTACCCAGCCTTACATGGTTGAAATATTTGCCAGCGTACATACAATATACAGATTTTAGCGTGTAACAGGCTAGGTCTGTAAGTAGCCTAAAAAGGAATGTGGAATCAGTGGAATTTGtgctgaaaaactacattacccatgatgctgTATAGCTGGTCCACCAATCAGAGTTCTCAtgaaacttaaatatttatgtatatattcatattttctaatatttacaatgtttcagttgtttcaaaTACTTTTTGCATAAAATGGAGTTTGCAATATTGGGATTCACCCTGTAGATGGTTGTTTTTAATGGCTAATAGCGCTttaaccaaaatgttttttttcttattccatATCGGAAAAATGTCTATTAAATATCTATAATGAAATTTGTCACACACTGTACACATAGCATGCTTCTCTCCCCCCTAAACCAGTACAGCACAAATCCCACCCAAAGCCAATTCTAAAAACCTATCCATTTTAATCCATCCATCATATTTATAAACTGAATCCATGAAGTCTTGAAGGT

Function

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63805 lncRNA downstream 145674 5747766 ~ 5755464 (-) True LOC122346634
XR_006251148.1 lncRNA downstream 146143 5747877 ~ 5754995 (-) False LOC122346634
XR_006251149.1 lncRNA downstream 153744 5745439 ~ 5747394 (-) True LOC122346635
TU63733 lncRNA downstream 246180 5654221 ~ 5654958 (-) True G43019
XR_006251160.1 lncRNA downstream 662443 5236821 ~ 5238695 (-) True LOC122346705
TU63938 lncRNA upstream 48049 5958793 ~ 5961685 (-) True desmb
TU63963 lncRNA upstream 85212 5995956 ~ 6483393 (-) True G43161
TU63978 lncRNA upstream 107696 6018440 ~ 6023510 (-) True G43173
TU63979 lncRNA upstream 107696 6018440 ~ 6023510 (-) False G43173
TU63996 lncRNA upstream 131132 6041876 ~ 6522265 (-) False cacnb4b
XM_043241618.1 mRNA downstream 64077 5831984 ~ 5837061 (-) True LOC122346765
XM_043241617.1 mRNA downstream 130812 5757002 ~ 5770326 (-) True LOC122346764
XM_043241369.1 mRNA downstream 164579 5723468 ~ 5736559 (-) True mylkb
XM_043241368.1 mRNA downstream 179491 5701022 ~ 5721647 (-) True fmnl2b
XM_043242781.1 mRNA downstream 201488 5691481 ~ 5699650 (-) False arl6ip6
XM_043242472.1 mRNA upstream 19586 5930330 ~ 5931637 (-) True cryba2a
XM_043241945.1 mRNA upstream 49792 5960536 ~ 5966604 (-) False desmb
XM_043241627.1 mRNA upstream 147454 6058198 ~ 6121716 (-) True LOC122346771
XM_043241370.1 mRNA upstream 345163 6255907 ~ 6259318 (-) True LOC122346636
XM_043241271.1 mRNA upstream 350116 6260860 ~ 6267795 (-) True LOC122346556
TU63795 other downstream 164518 5731218 ~ 5736620 (-) False mylkb
XR_006251223.1 other downstream 201488 5691481 ~ 5699650 (-) True arl6ip6
XR_006251179.1 other downstream 261213 5622686 ~ 5639925 (-) False adam23a
TU63628 other downstream 670428 5229456 ~ 5230710 (-) True G42958
unassigned_transcript_1085 other downstream 945520 4955546 ~ 4955618 (-) True trnak-uuu_105
TU64004 other upstream 362579 6273323 ~ 6301137 (-) True G43180
TU64005 other upstream 362579 6273323 ~ 6301137 (-) False G43180
TU64096 other upstream 908615 6819359 ~ 6827728 (-) False G43248
TU64095 other upstream 913496 6824240 ~ 6827728 (-) True G43248
TU64107 other upstream 1090371 7001115 ~ 7027427 (-) False trim63a

Expression Profile