RNA id: XM_043240990.1


Basic Information

Item Value
RNA id XM_043240990.1
length 1907
RNA type mRNA
GC content 0.44
exon number 4
gene id tefm
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10123815 ~ 10126741 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGCCGTGTTTCCACACGAGCCTTTGCGCGTCGGACCTCCGAGGGCAACGCGTAGGGCACTGTCATATgtaagaaaaacacagagctgtGGCGATCAAACATGTGGATCGCAAAACGCCTGCTGTCTTCCGTCTTCCTCAaagGGCACTATAGTCTGTTCTGTCGCCGCCCGAGCTCTTTCCCTAAATATGAGCTCCGATTTTTGCACTGCACCTGTTGCAGAAGGAGCAGAATCATGATCTGTGGGCTTGACAACTTGAATACATCGGTTTCCTCTGAATTATGCCAAGAAAAGCACAAACCCCTGGACTGGTGTTATACCACAGAGCAGCGTGCTGTCATCCTTCAGCACCTCAATACAGCCACAGAGTCAGAACTGGAACAGGTCAAACTGCTACGAGGACGGAAAGCTACTAACATCGTTAAATACAGAACCGCTTACGGACCGTTTAACAGCCTGGAGAGTGTCATGAACGTGCCCTTACTGAAACAGAAGAGTGCTGTCACAGTCTTTAACTCTATCCTTAACCCAGCTGAcaagaaagagaggagaaaaggAAAAGTCCAGCTGGCTAAATTTATAAGGCCGGAGGTCGACCGAGCTCTGCTGGAGaATGCAAGCTCTATAGTGTCCATTGTTTGTGGTACTAATAAAATTGCATGGACACACATGGATCACGCAAGAACCGTCTTAGACTGGCAGCAAGCAGAGTGCAAGAGTTTTATGAAAGGAACATACATGGCGTCCGATTATTTGGAAGATCTCTCCGCTGTTATTTCAAGCTTCCCTCCTGCTGACTTTTTTTTGGTGGAGAAGCCAAACATCTCTCCCCAGAATACTTCTCTTTACCCAGTCTTAGTCCATCTCCGAACAGTAGAGGCCATGTTATTTGCTTTACTAACTGCAGCGAGGGACCCGGAAAGCCCCCCGAAAGTCCTTAACATGATGCGCACGGCTGTCGGCCGCCATTTCAACCTAATAGTGGGGGATTGTCGTACAAGTGGAGCCGAGACGGTGAGGAAGATGATGACGGAGTCCGTGATGAAGCAAGATCCACGCGTTCTTTTTCCTCATGACTTGGTGTTAAAGCACAGAAACTCCTTTAAGATGAGCAGCAGGAACAAAGGAGAAGAGCTGTGCGACGCTCTCCTGCAAGCCGTTGCGTTTTTTGAACTCCTGCATGAGTGAATTTTCTACTGAATGGCTATTTCTGATTTGTTGGACATCTTTACACAGTTCTTTCTCTGAAACAAAggctatatattaaaaacaatttacattGTTTGAACATGACACatgagtttatttaattttcatcttAAACTAGGACTGTCTAGGACTGTCTCCTACTGTCGAGgagaaactttaaaaatgtagaaaggGTAAAAGTTACGGTAACACTCAATTATAAACATTGTTATAGCATTGTTAAAGAGGGAAtcaaccccaaaatgaaaactcaaatTGTACATGTATGAGCTTCATTCTTTGTTCTGTTACACAAAAGAATAGCAAATAGTTGCTGGTAGCCATTTGGTATGGGGAAAAATGATTGGAAACCAGTAGCTTTCAGTAACGGGTTGGTTTCCAGTGATCTTTAGTATATTTATGTGCAGCTGAAGAAAGATATTCATgaaggtttggaatgacttaACGTCTTTTGTGGGGAACTATCCCTGCCAGTGTTGATTCTTGCTGCACTTCTCTTTCAATTAACTAGAGTCTTGGACCTGGATATCCCCAACCCTCGATTCCATGCTGCATCACCTGAACTGGTTGTGTCAGATAAAAGAGACATCCAAAAAGTGTACAGTCAGGGTTACTCCAGGACAAAATGATCAGAACTTATAGAGGTAAATGTGTGTtaattacagtgaaaaaaataaaatactgtgatTATCTTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006390 mitochondrial transcription biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0006259 DNA metabolic process biological_process
GO:0042645 mitochondrial nucleoid cellular_component
GO:0030337 DNA polymerase processivity factor activity molecular_function

KEGG:

id description
K17658 TEFM; transcription elongation factor, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65311 lncRNA downstream 25636 10097980 ~ 10098179 (-) True G44105
TU65294 lncRNA downstream 39540 10083990 ~ 10084275 (-) True G44095
TU65251 lncRNA downstream 105747 10013936 ~ 10018068 (-) True G44065
TU65222 lncRNA downstream 174830 9945667 ~ 9948985 (-) False anapc11
TU65386 lncRNA upstream 12164 10138905 ~ 10145147 (-) True cd7al
TU65412 lncRNA upstream 111678 10238419 ~ 10238618 (-) True G44167
TU65413 lncRNA upstream 115469 10242210 ~ 10242509 (-) True G44168
TU65408 lncRNA upstream 115963 10242704 ~ 10243401 (-) False tnrc6c2
TU65477 lncRNA upstream 229273 10356014 ~ 10356314 (-) False LOC122347367
XM_043241684.1 mRNA downstream 17007 10101483 ~ 10106808 (-) True utp6
XM_043242429.1 mRNA downstream 74947 10039427 ~ 10048868 (-) False trim25
XM_043242426.1 mRNA downstream 74954 10039427 ~ 10048861 (-) True trim25
XM_043242427.1 mRNA downstream 74958 10039427 ~ 10048857 (-) False trim25
XM_043242428.1 mRNA downstream 74959 10039427 ~ 10048856 (-) False trim25
XM_043240992.1 mRNA upstream 15006 10141747 ~ 10145168 (-) False cd7al
XM_043240987.1 mRNA upstream 19483 10146224 ~ 10152064 (-) False znf207b
XM_043240986.1 mRNA upstream 19483 10146224 ~ 10152064 (-) True znf207b
XM_043240988.1 mRNA upstream 19483 10146224 ~ 10152063 (-) False znf207b
XM_043242579.1 mRNA upstream 40495 10167236 ~ 10202756 (-) False rhbdl3
TU65247 other downstream 96180 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 851510 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 852893 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 856491 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 862570 9260616 ~ 9261245 (-) True G43890
TU65385 other upstream 14870 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 583304 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 928294 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 928294 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1845739 11972480 ~ 11972551 (-) True trnag-ucc_1

Expression Profile