RNA id: XM_043241029.1


Basic Information

Item Value
RNA id XM_043241029.1
length 4112
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC122346420
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 23083243 ~ 23095606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGTCCCATATCTAAGGGAGGAGTCACAGTTCCTCATCACACTCATGTCTTTGATCAGAACTCGCATGTAAGCCTATCCCTCGGCCAACACCCCGAAGAAGCAACAGGACACCTTTGAGGACCATCTCAAGTTGGGTCGCAAAGGTGAAGTCGGCACTCAAAGCTGAATAAAGAGCACGGGACACAAGTCACAAAGACCGAGTTCCCTGAATCCCACATGCCAAGATGAAATTTACAAAAAGCAAGGAAGAGGAGCCCACTGCTCCTGGGCAAGTGGCCATTAGGAAGCGATCTAAAGTCCCAGGAGTAATGATAACACAGTTTGTGAAGGAAATCCCAGCAGGAAAAAGTCATCCCGACTTCACCCGCAAACCCATTGCCTTAACTATTCAGGAAGGAAAGCTTGCCGTTTTCAAAGCTATCGTCACGGGAGATCCAACACCAACTGTGACATGGGCTCGAAACAATGGAGATGTATCTGATCCTGAAAGATATGTTGCTTTGTATGATCAAGTCGCAGGAGAACATCAATTACAGATGCCCAATGTTGGAGTTGATCAAGCAGACACATATAAATGTTACTCAAATAATGAATATGGACGCGCTATAGTCACAGTCACGCTCAACGTAATTGAAGttgggTTCAAGAAGAGCAAAGCAATGCAGGAAGCACGATTAGagcaACGAGAGAAAGCAGCAGTCGATTTAAAAAAGACCCTGAGGACCCGAGCCGAAcaaaaggaggagaagaaagatggagaagtTGATGAGAAATTCTGGGAACTGTTGCTGAGCGCTGATAAGAAAGATTACGAGCACATCTGCACTGAATACGGGGTGACTGACTTCCGCTGGATGTTGAAGAAACTGAAcgagaagaaaaaggaaatagAGGAGCAGCAGTCGCagTACATTGAACACCTGAGCAACCTGAGACATATTGAAATCAAGACGCCTGGATGtgctgaatttgaatttgagatGGATCTCAAAGATCCCAGTGCCAGAATTTTCCTCTTTAAGGATGGTGTGATGGTTCCATTTAACTCTGATACAGATGAGAAGCATTGTCTGCGTCAAGTCGGCAGGAAATTCATATTTAGTGTACGTGGTTTGAGTGCAGAAGATGCTGGATTGTATCAAGTCGATATTGAGGGGGTCAATGTCTTCTCCACTGACTTTAAAATTCCAGCAGTAGATTTCTTGGTAAAGATTCAGGAAGTGAAGGCTGTGGAAAGACAGGATGCTGTGTTTGAGTGTGTCTTATCTGCTCCACTACCTAAGATGTCTTGGATAGGCAAGAACGTTGCCCTGGAACAGGGTGAAAAGTATGACATCTCTGTCTCTGAAGACATGCTAATCCATAGACTGGTGGTGAAGGACTGTATGCAAGTGGACAAAGGCATCTATGCAGCTGTGGCTGGAATGAAGTCTTGTAATGCCTGGCTGATAGTGGAGGCTGACCCAGATCCGAACCAAAGGGGCAAGAAGGGAGCACGCAAAACCACTCAAGCAGGAGGTGGAGGCGAAGACCTGATCAAGATTGCGGCAGAGCAGCAGGAGAAGCTGCAGAAGGAGCGCGAGGAGAGGATGGAGCAGCTGAAACAGATTCAGGCTGAACAGGCTGCTGCCAAAGAAGCGGAGAAAAAAGCGGAAGAAGAGAAACCAGCAACTGCTACACCAGAACCGACAAAACCAAAGGCAAAACCTAAACCCAAAGCCAAGCCTAAACCAGAAGGTGCAGCAGAAGAGCCAGAGGTGGAGGAGGAACATCCAGAAGAAGAAGCTGCTCCACAACCACCAGATGAAGAGGCACCAAGTGAGGAGCCAAGGAAGAGAGTGAGAACTGGGCCCTTGGTCCCAGACACCATTATTGATCCAGGAGTTCACTTCACCAGCGGACTGTCAGATGTTCATGCCATAATTGGTCAGTCAGCTGAAATGGTGTGCAAACTCAGCAGTGAAAAGTGTGATGGCATTTGGTATAAGGATGGAAAAGAGATAACAGCCACAGATGATCTAAAGATTGTCAAAGATGGAGCAGTCCATAAACTAATTGTATCAAACTGCACAGAGGACGACAGTGGAAAGTATCGCTTTGAGGCAGATGGACGTAAAACTGAGGCTATGTTGGTCGTGGAAGATCCACCAAGGATGAATCAAGATGACTTGGCTAAATTCTCAGAGCCTGTGATAATCAAGGTTGGCCAAAATGCAACTTTCAAAATGGACTTTGTAGGTCGTGAGCCAATGAAAATACAGTGGTACAATGAGGGTGAGGAGATGCTTGAGGATAATCACATCAGGATTGAGAAGTCGGATAGTCACAGTCGCCTTCTACTTGTGAAATGTCAACGCAAAGACAGTGGAGAAATAAAGCTGAAGCTCAAAAATGAGTTTGGAACCATCGAGGCCTTTTCAAGGCTTATCGTTCTAGATAAACCCACCAACCCAATGGGACCCGTTGAAGTATTAGAAGCCTCATCATCTTGTGTGGAGTTCAAGTGGAAATCCCCAAAGGACGATGGCGGTTCTCCTATAAAAAACTACTATATTGAGCGCAACCAGATTGGACGTAACACCTGGACAAAAATCGGAAATATCCCTGGAGAGCCCCATTACAAGGATACTGACGTGGACCATGGAAGGAAGTACTGCTATCGCATAAGGGCTGTGACTGAAGAGGGCACCAGCGATGTTTTTGAGACAAATGACATCCAGGCTGGCACTAAAGCATTTCCTGGACCACCATCTACACCTAAAGTGGTCAGTGCCTTTAAGAACTGCATCACTTTGGCATGGACACCTCCCACCAACACTGGTGGAACCAACATTGTTGGCTACAATATGGAGAAACGCAAACGGGGCAGCAACTTATGGGGTCAAGTGAACCCCCCTGATGAGCCAATCAAAgGCAAACAGTATGATGTGAAAGATGTTGTTGAAGGAATGGAATATGAATTTCGTGTGTCAGCCATCAACTTCTCTGGTGCTGGAGAACCAAGCACACCCTCTGATTTTGTGATAGCCAGAGATCCAAAAAAACCCCCTGGTAAAGTCATTGACCTGAAAGTCACAGACTCCACCTATACCTCTTTGTCTTTGAGTTGGACTAAACCGAAGGAAGAGGAAGGTGTCCAGGATGAAGCTAAAGGTTATTTTGTGGAATTAAGGCCAGCTGAGAACACAGAATGGGGTCGCTGCAACTCAAACCCACTTATTTCAACTTCCTATACAATTCTTGGCCTCAAGTCTATGGCTATGTACTGGGTCCGAGTGGTTGCAACCAATGAAGGAGGTGATGGGGAACCCCGAGATCTGGACAACTACATCATTGCCATGCCTCCACCTGTGAGGCCAAATTTCACCAATCGCAAAATGAAGAGCTTTATGGTCATGAGAGCTGAAAATTCAGTGCGGGTCAACATAAACTATGAGGCATCCCCAATGCCAACTATAATCTGGCTGAAAGATGGAATGCCTGTGTCCAAACGTGTGACCGTGAGCAATACTGACGGGATGTCCCAGCTCCTGATTCCCAGTGCTGAGCGTTCTGATAGCGGGATCTACACCATCATAGTCAAGAACATAGTGGGTCAGGAGACGTTTAGTGTGGAGATCAGAGTGACGGATGATCCAAAGCCACCTGGCCCAGTGGAGCTGGAAGAAAATGTCCCTGGCACACTGACAATTTCTTGGGAACCATCTCCTGATGAGAAACGAGATAATCACTTGCACTATATGGTGATGAAACGGGACTCCGTCAAACGCACCTGGCATACAGTAGCTGACCGCTTGTTCAACAACAACTTCACAGCAGTCAACATCATGCCAGGAAGGGAATATAACTTTCGCGTGTGTGCCAAAAATGACATAGGCCTCTCAGAACCATCTGAGTCCCTGACATGGGGTGTTGTGAGAAAAAAAAGAAAAATTCAGCCTCAACTTAGCCCCATCCAAACCTTGCAACTTTGACTCTGCTCCCATTTTCACGGTTCCCCTGAAGATGCACACTACGCCAGAGAAATATGAGTGCTACATGAGCTGTGCTGTGAGAGGAGACCCCATACCTCATGTCACCTGGTACCGCAACAACATCAGCCTCAACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70413 lncRNA downstream 68329 23014864 ~ 23015613 (-) True G47523
TU70394 lncRNA downstream 171909 22911471 ~ 22912033 (-) True G47508
TU70296 lncRNA downstream 199109 22883663 ~ 22884833 (-) True G47435
TU70268 lncRNA downstream 373314 22697899 ~ 22710628 (-) True G47412
TU70163 lncRNA downstream 672503 22342122 ~ 22411439 (-) True G47334
TU70437 lncRNA upstream 37696 23133302 ~ 23163157 (-) True G47535
TU70864 lncRNA upstream 917835 24013441 ~ 24038303 (-) False rap1gapb
TU70875 lncRNA upstream 950178 24045784 ~ 24048986 (-) True G47863
TU70871 lncRNA upstream 962968 24058574 ~ 24059263 (-) True G47860
XR_006251131.1 lncRNA upstream 980390 24075996 ~ 24077407 (-) True LOC122346445
XM_043241030.1 mRNA downstream 22913 23051176 ~ 23061029 (-) True igfn1.4
XM_043241382.1 mRNA downstream 36329 23038696 ~ 23047613 (-) True LOC122346646
XM_043241008.1 mRNA downstream 45837 23033990 ~ 23038105 (-) True zgc:66479
XM_043242447.1 mRNA downstream 50659 23028936 ~ 23033283 (-) True tarbp2
XM_043241009.1 mRNA downstream 108099 22968145 ~ 22975843 (-) True ptgis
XM_043241026.1 mRNA upstream 870 23096476 ~ 23120869 (-) False igfn1.1
XM_043241025.1 mRNA upstream 870 23096476 ~ 23120869 (-) True igfn1.1
XM_043241027.1 mRNA upstream 870 23096476 ~ 23120868 (-) False igfn1.1
XM_043242894.1 mRNA upstream 185562 23281168 ~ 23307044 (-) True LOC122347531
XM_043242905.1 mRNA upstream 279920 23375526 ~ 23379971 (-) True LOC122347543
XR_006251209.1 other downstream 332995 22739972 ~ 22750947 (-) False tardbpb
TU70438 other upstream 26177 23121783 ~ 23153123 (-) False G47535
TU70517 other upstream 303743 23399349 ~ 23400502 (-) True G47590
TU70553 other upstream 557612 23653218 ~ 23656456 (-) False LOC122347542
TU70562 other upstream 579666 23675272 ~ 23676792 (-) True G47627
TU70955 other upstream 1384528 24480134 ~ 24498681 (-) False ngfb

Expression Profile