RNA id: XM_043241038.1


Basic Information

Item Value
RNA id XM_043241038.1
length 2212
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC122346426
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12464542 ~ 12469417 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAAAAATAGCAGTGTGAAAGACAAGCATGCTGTCCCAGTGACTCTGCAAAAGACGGCGTGTCCCCCATCTCAGACAGCAGCAACAAAAAAGTCTACGTTCTAAACAAgaacttttaaataatgtatgattTCTGCTTTCATTCACAAACAGGTAAACACTGAAAACATCTGTTGGCTGGCCCTGAATGCATTAAGGCCATAGGTCAAAGTGTCGTCATGGTGCGTAATATAGACGATCTAGACTTCTGTCTCTCTTCCCATCCCCAGAGTATCATGGAGGGCCTGCGCTCCCTCTGTTCTCAACCCAAACTTGTGGATGTCACCTTGAGCGCAGGTGGACAAGATTTCCCCTGTCACCGGGGAATCCTTGCTCTCTGCAGCCACTACTTCCGTTCCATGTTCTCAGGAGATTTTGTAGAGAGTATTGCTGCTCGTGTTGAGCTTCATGATGTAGATCCCAATGTGTTGTCATCCTTGCTGGACTTTGCATACACAGGGAAACTCACcatcaataaaaacaatgtagaGGGACTCATCTGCACATCCAGCCAGCTCCAGTTCCACACCGTTCGTACTGTATGCAGTCGATATCTGCAGCACCAGATAGATGCCACAAACTGCTTGGGAATCCTTGAGTTTGGAGAGATCCATGGCTGCCCTGAAGTTGTCGCCAAAGCATGGAGCTTCCTCCTTGAAAATTTTGAGGCAGTGCAGCAACATGAGGAGTTCTTGATGCTGGAGAAAGACAGGTTGGCAGCCTGCCTGAAGGATGAGGATCTGCATATAAGAGATGACAGGTCTTGTGTCGAGGCTGTTCTGGCCTGGGTCGGGCATTGTAGAGACAATCGGATCTGCCATCTTAGAATTGTTGGACTTGGTTAAGCTTTCCTCCTCACAGAATCCTACCTCACTGAGAACTTGCTGAAAGAGTCATTGGTGCAAGACTCACTAGAATCCAAAGAGTTCATAGAGAGAACATGTAGAGAGAAACAAGAAATGAAAGGAGGTGAGTCAGAGCAGAGAGTGACCCAGAATGCCCTCAACCTGCAGGAGGTTTTGTTTGTGATGGGTGGCCGCTCGCTGGATGACTcggatgatgaggatgaggatgaagatgaagacaCAGACAGTAGGGTGCACCCCAGAAATTGTGGTTTCTACAACCCAAAGCTTGGGCAGTGGTTTCAGCTACCTGATTTTCCCAACTACAATAAATGGGGTTATTCTGTCGTCTCCTTAAACAACAATGTGTATGTCACAGGAGGATCAAGAGGGTCTCAGTCCAACACCTGGTCCACCACAGAGACTTGGAAGTACATTACTCGTGAGGGCAAGTGGGTCACAGTCGCTCCGATGTTGCGTCCCAGGACTAACCACTCTTCTGCAACCCTTAATGGAGAGATTTATGTAATTGGGGGAACTACAATGGATTTTGTTGAAGTTGAACATTATGACCCCTTCAGTAATTGCTGGACGCTTACGGGCCCAGCGCTAAAGTATGTGACTAACTTTACAGCCACATCATGTGAAGGAAAGCTTTACCTCATTGGTTCTTGCGCTGTTAAATATAATGCCCTGACTATGCAGTGCTACAATCCTGTCATAGATAGCTGGTGTATCATCTGTTCCCCTTTTATTCCTAAGTATCTCTCATCTCCCCGCTCGGTTTCTATGGAGGGAGTCATTTACCTCGTAGCAGATAACACCAAAAAAGTCTATTTGTATAACCCAGAGGGTAATATGTGGGAAAAAATTCAGTTTTTACACACTCTTCATGAAAATGGGGATTTGGTGGTTCTAGGTGGGAAGATGTACGTGACTGGGGGGCACTGGAAGGGCATGGAGGGCGATTACGGTGTGGAAGTAGAAGTGTACAACCGAGCATCCAACACTTGGAAGGTGGAGTGCTTCCTTCCCAGGCTATGGACTTATAGTGGCTACTGCTCCATCTTTCTGGACACTTCCCAGTGGACAGAATTATTCCCTGAAGAGACTTAATATCTGTGTTGTTCCCCAAATCTTGACATAGGCTTTGGTGCAAAGTTGCATTTTGTATAGTAAGTTTTGGTGATATTATAAATTTTTGATAAGGGatttttagattacatttttttttttacataatttacttaGCTGTTGTTTGCTTTCTTGTGTCCAGTGAAAATCTTTGAATTAAACAacctttaattttacatttaagtatatatata

Function

GO: NA

KEGG:

id description
K10466 KLHL30; kelch-like protein 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65952 lncRNA upstream 199755 11779030 ~ 12264787 (+) False G44568
TU65951 lncRNA upstream 199755 11848412 ~ 12264787 (+) True G44568
TU66030 lncRNA upstream 304647 12158062 ~ 12159895 (+) False scly
TU66023 lncRNA upstream 309110 12154322 ~ 12155432 (+) False scly
TU65995 lncRNA upstream 372087 12087399 ~ 12092455 (+) True G44588
TU66049 lncRNA downstream 7707 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 7707 12477124 ~ 12482182 (+) False G44604
TU66052 lncRNA downstream 23536 12492953 ~ 12493642 (+) True G44606
TU66058 lncRNA downstream 52356 12521773 ~ 12526890 (+) True LOC122347491
TU66062 lncRNA downstream 94675 12564092 ~ 12671665 (+) True G44611
XM_043241073.1 mRNA upstream 20301 12439100 ~ 12444241 (+) True LOC122346457
XM_043241013.1 mRNA upstream 304643 12154268 ~ 12159899 (+) True scly
XM_043241412.1 mRNA upstream 311578 12097684 ~ 12152964 (+) False kif1aa
XM_043242840.1 mRNA downstream 55623 12525040 ~ 12526957 (+) False LOC122347491
XM_043242035.1 mRNA downstream 235228 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 241565 12710982 ~ 12731083 (+) False LOC122347050
XM_043241695.1 mRNA downstream 271402 12740819 ~ 12760408 (+) True LOC122346842
XM_043241014.1 mRNA downstream 291443 12760860 ~ 12765699 (+) True LOC122346411
TU65993 other upstream 372087 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 454433 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 491498 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1044212 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 296766 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 611193 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 639318 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 924812 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1502756 13972173 ~ 13979005 (+) False meltf

Expression Profile