RNA id: XM_043241043.1


Basic Information

Item Value
RNA id XM_043241043.1
length 741
RNA type mRNA
GC content 0.44
exon number 6
gene id ndufb5
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13693377 ~ 13696789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGTGAAGGCTTTTGCTCACGCGCTTCCCACAACAGTCATGGCCGGCATGAGCCTTCTGCGGACGGCGGCTGCTCTTACAGCCCGATTAAACCCGCTGAAACGATCGTGCCAGTCCGCCAATCTGCTCTCCAGGACCGTTGCACGTTCAGGACAAGttgTTGTCCGTCATGGGAGCCATGGGAAAAGGATGTTTATCATCAGGTCCACTGACTTCTATGACAAAAGATTTCTTTCCTTGCTGAGATTTTACGTTCTTCTCACAGCCATCCCCGTGGCGGCTCTTGTGAcgtttgttaatattttcatagGAGAATGTGAGCTGACCGAGATTCCCGAAGGATACGAACCAGAGCATTGGGAGTACTACAAGCATCCCATCACCCGTTGGATTGCTCGTACCTTATATGACAGCCCAGTAAAGGACTATGAGAAAATGATGGCACTTATCCAAATAGAGACTGAGAAATCTGAAATGAGACAACTAGAAAATGAAGTCCGCCGACAAATGAGAACAAAAGGAGATGGACCCTGGTTCCATATTAAGACACCTGATAGCCGTCTTATCAACAACGGCATCAAGGCAACCCCTGATAACTAGGAGTGGTCATGCGTACCTGTCCAAAATATTCAGTCATTAtacaatgtataatgtataatgtattgttataaattaaaaaaaaacatgtttctttttcttttttttgcctctCGCACCAATAAACTAAGGATTATAACTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03961 NDUFB5; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66600 lncRNA upstream 31280 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 35611 13656192 ~ 13657766 (+) True LOC122346715
TU66598 lncRNA upstream 42494 13650115 ~ 13650883 (+) True G44997
TU66580 lncRNA upstream 98776 13589986 ~ 13594601 (+) False LOC122346508
XR_006251135.1 lncRNA upstream 98840 13589885 ~ 13594537 (+) True LOC122346508
TU66675 lncRNA downstream 139818 13836607 ~ 13836819 (+) True G45056
TU66694 lncRNA downstream 163466 13860255 ~ 13860609 (+) True G45070
TU66717 lncRNA downstream 295956 13992745 ~ 13996966 (+) True G45075
TU66727 lncRNA downstream 319646 14016435 ~ 14128344 (+) True G45084
XR_006251242.1 lncRNA downstream 432558 14129347 ~ 14131078 (+) True LOC122347615
XM_043242699.1 mRNA upstream 2427 13684429 ~ 13690950 (+) True actl6a
XM_043241552.1 mRNA upstream 38221 13652396 ~ 13655156 (+) True si:ch211-201h21.5
XM_043241549.1 mRNA upstream 49104 13638994 ~ 13644273 (+) True zgc:172121
XM_043241818.1 mRNA downstream 1003 13697792 ~ 13722434 (+) True usp13
XM_043241819.1 mRNA downstream 1003 13697792 ~ 13722434 (+) False usp13
XM_043241821.1 mRNA downstream 1003 13697792 ~ 13722434 (+) False usp13
XM_043241822.1 mRNA downstream 1003 13697792 ~ 13722434 (+) False usp13
XM_043242544.1 mRNA downstream 117127 13813916 ~ 13819919 (+) True pde6d
TU66465 other upstream 283465 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 584011 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 611258 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 912457 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1600922 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 275384 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 384144 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1539422 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1662072 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1868192 15564981 ~ 15566668 (+) True G45448

Expression Profile