RNA id: XM_043241046.1


Basic Information

Item Value
RNA id XM_043241046.1
length 1897
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122346434
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15331236 ~ 15333933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGAGCGCTGCGCGATTTACCAGAAGAAGAAGGTCGTCCTGTCATATGGagaatttcagttttattcatgTACCATCATTAGTTTCCAATCGATTATGCCAAACTGATCCGACACGATTTTGTAGATATAAGCAGGCCTCAAAACAGGTTGTACGGAATTAAAGCTGTCAAAAAATGGAGGTGTTTATGCTTCACTGGTATCGCAAAGTCCCAACCCTTCTGTCCGGGAAGCTCTTCAAAGCGGTAAAAAGAAGCGACATCAGATGTGCCATCCACACCTCTCCCCTCGTCTCTGTCCCTTCAAAACCAGCCGTCCCACCACCGCTCGTGTCTCGCCTCTTCCAGCCGTCCAACCTCCGGGAGGGTCAGGAGGGAGGAGACCTGACCTGCCGCAGCCATAGACTGATGCTGCAGACAGGGCTTATCTATCCCTCCAACCCTGGCTGCTTCTATTACTTACCAGTCGCTCTGAGGTCCATGGAGAAGCTGGTACGGCTCATTGATGAAGAGATGCATGCAATCGGTGGGCAGAAAGTTGACATGCCGGCACTGTGCAGTGCAGAACTTTGGAAGAAGAGTGGCCGCTGGGAGCTTATGGGGAAAGAGATGTTCAGGTTACTGGATCGGCACAATGCTGAATATTGCCTCGGGCCGACTCATGAAGAAGCAGTCACAGAGCTTTTTGCTTCCCAGACGACTATATCTTACAAGAAGCTGCCACTTCTTCTGTACCAGGTAACACGCAAGTTCCGTGATGAACAGAAGCCAAAGTTTGGGCTCCTACGTGGCCGGGAATTCTACATGAAAGACATGTATTCATTTGACGTTAATGAAGAGGCGGCTCTTCATACGTACCACTCTGTGTGCCGGTCTTATGGACGGATATTTGACCGACTAGGCTTGAATTGGGTGCAGGTACAGGCTGCCACCGGCAACATAGGAGGCACGCTTTCCCACGAGTTTCAACTGCCGGCCGACATTGGCGAAGACCAGTTACttgtttgtggaaactgtggCTTCTCTGCCAACATTGAAACTATGGAAGCAGGGCAGACTGAGTGCTCACAGTGCCGAGCGGGCACACTGACTGAATCCAAAGGCATCGAAGTTGGCCACACTTTTTACCTCGGCACTAAATACTCACAGGCATTTAGGGCCATGTTCATTAATGCGTCCAATGTGCCTGCAGTGGCTGAGATGGGGTGCTTCGGGCTTGGCGTCACTCGAATACTCGCTGCTTCTATAGAGGTGATGTCATCCAAGGATGCTGTTCGCTGGCCCGGGTTGATCGCTCCCTATCAAGTGTGCGTCCTGCCACCTAAAAAGGGCAGCAAAGCAAATGACGCCACACAAGTGTCTGAGGAACTGGCTCAAAGCTTGGGAAACAGCCTAACTAACTTGAGAGGAGAGGTGGTACTGGATGACAGGGTTCACATGACCATTGGTAAACGGCTGAAGGATGCTAAGATTTTAGGGTATCCATATGTGGTGGTGGTAGGACAGAAAGCCCTGGAGGATCTGCCCAGCTTTGAGGTGATTTGTCAGCGGACTGAAGAGACCATGTTTCTCAGTAAAGAGGGGCTAGTGGATCTTTTAAGTAAAGTTGAAACTATCTaatatttttagaacatttttgcatacattttacaaGTGTTCAAGCATTGTTTGtgtctgtaataaatgtatgtgatgTAGAAATCTCTGTAATGTTATAACAAggaaatattgttaataaaatgtgcctctttgttatattttgtcatttgttattgtcattttagaCCCACTAAGCTTCACTAAGTATAATTTAAAGCTGAAAAACTGATTTCAGTAATGACATATTATCTACAAGTTAAGATAATTGTTGCCAAATGCTTTAATGCAAAGTCTGCTCAA

Function

GO:

id name namespace
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K01881 PARS, proS; prolyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67460 lncRNA downstream 11202 15319385 ~ 15320034 (-) True G45560
TU67412 lncRNA downstream 91596 15185152 ~ 15239640 (-) False G45543
TU67480 lncRNA upstream 148973 15482906 ~ 15484967 (-) True G45579
TU67453 lncRNA upstream 152730 15486663 ~ 15489101 (-) True G45554
TU67483 lncRNA upstream 155185 15489118 ~ 15490685 (-) True insl5a
TU67490 lncRNA upstream 201453 15535386 ~ 15657179 (-) False LOC122346545
XR_006251193.1 lncRNA upstream 246651 15580584 ~ 15581055 (-) True LOC122347074
XM_043242964.1 mRNA downstream 385 15327583 ~ 15330851 (-) True LOC122347580
XM_043241714.1 mRNA downstream 75076 15246429 ~ 15256160 (-) True LOC122346855
XM_043243036.1 mRNA downstream 119255 15187162 ~ 15211981 (-) True adcyap1r1b
XM_043243037.1 mRNA downstream 119729 15187162 ~ 15211507 (-) False adcyap1r1b
XM_043241228.1 mRNA downstream 183151 15144790 ~ 15148085 (-) True LOC122346528
XM_043242571.1 mRNA upstream 10996 15344929 ~ 15394123 (-) True sgip1a
XM_043242507.1 mRNA upstream 155228 15489161 ~ 15490679 (-) False insl5a
XM_043241018.1 mRNA upstream 260430 15594363 ~ 15600846 (-) True LOC122346414
XM_043241327.1 mRNA upstream 267499 15601432 ~ 15603448 (-) True LOC122346598
XM_043241258.1 mRNA upstream 322803 15656736 ~ 15685485 (-) True LOC122346545
TU67455 other downstream 419 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 1138070 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1649962 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1863297 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1863671 13467494 ~ 13467565 (-) True trnaa-ugc_115
TU67521 other upstream 269977 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 725035 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 725960 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1027267 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 1482707 16816640 ~ 16830208 (-) True rgs8

Expression Profile