RNA id: XM_043241078.1


Basic Information

Item Value
RNA id XM_043241078.1
length 8193
RNA type mRNA
GC content 0.46
exon number 38
gene id dip2bb
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19404467 ~ 19434213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCGGCTTCAGCGCACAGGCTCAGACTCCTCATCCCGAGCGCTGGTCATGTGACTCTTCCCATCGGCTGGGATTTCTCTCTCGGCATGGCGGAGATGATGGAGCTCGGTCTGCCGTCTGATACCATTTGTTTTTCACTGTGAGGAGGACACGGGCGTGTTCGTTGTCGGTAAACCGTTCTGCGCCGTTCTTCCCCCCCGGTTTCGGGCCGTAATGGCGGAGCGCGGTGTGGATGTGTCCGCTCTCCCTCAAGAGGTCCGGGAGCAGCTCGCTGAGCTGGACCTGGAGCTGTCGGAGGgTGACATCACACAAAAAGGATACGAGAAGAAGAGGGCCAAGGTTTTAGCACCCTAtttgacacaaacacaaaATTTAGCTCCGCCTCCGGCCTATGATGCACAGTCTCCTGGTCCAAGCTCCGCCTCTGCACCTGAACCTGGCCCTTCAAactcgtcctcctcctcttctcgcCACCGGCGCACACGGCGTCCACACCGGAGCGGCGGGACGAGAGATGAACGCTACAGATCAGATATCCATACTGAGGCTGTTCAAGCAGCATTGGCCAAACATAAAGAGGAAAAGATGGCGCTGCCCATGCCAACCAAACGTCGGTCCGCATATGTACAGTCACCAATTGACAACTGCACCCCTCCAGactcctcctcttcctctgatgATGAGGCGGTGTCGAGTGAAAGTGCAGGGCCTCAGCAGTCTCCAGACACCTGGATTAATAGCTCCCTGCACggctcctccacctcctcctctgccTCCTCCACTCTCTCCCATGGGGAGTCTCGGCCCACCCAGGCCCCTCAGCCTCAGTCTCAGCAGGTCCCACCTCCACCTGCACCTGCCCACCCGCCCCACTCCCACTCCCAGCCCTCCGCCCTGGCAGAGGCCTTCGCTCAGGCACGCATCGATCCGGTAGGAGGAGTCGGGCCCCCTGATGTGCCATCCCAAGCTCAGGCCAGAGGCTCTCGTGTGGATCTGCCTGCCAACGCCGTGGTGCGAGGCATGAGTCGAGGCCAGAGCCGGTCCAGCATGATGGAGACAGCAGACGGTGTTCCAGTGTCCAGTCGTGTATCCACAAAGATTCAGCAGTTGCTAAACACGCTAAAACGACCCAAACGCCCGCCACTCAGTGAGTTCTTCATGGATGACCAAGAGGAGATTGTAGAAGTTCCTCAGGCAGATCCTAACACCCCAAAGCCAGAAGGCCGGCAGATAATCCCAGTGAAGGGGGAGCCGTTGGGTGTGGTCAGTAACTGGCCTCCTGCTCTTCAGGCAGCATTAGCTCGATGGGGTGCTACACAAGGCAAGAGCCCTGCCCTCACAGCTCTGGATATCACTGGAAAACCACTTTATACTCTTACGTATGGGAAACTGTGGAGTCGCAGCGTTAAGCTGGCCTACACTCTTCTCAACAAGCTGGGAACCAAAAACGAACAGATCCTCAAACCAGGAGACaggGTGGCGTTGGTGTATCCTAACAGTGACCCTGGTATGTTCTGGGTTGCGTTTTACGGCTGTTTGTTGGCTGAAGTCATTCCTGTGCCCATAGAGGTTCCATTATCCCGAAAGgATGCTGGAAGCAGCCAGGTTGGTTTTTTGTTAGGTAGCTGTGGGGTGGGTCTGGCTTTGACCAGTGAGATCTGTTTGAAGGGTTTACCCAAGACCCCCACTGGAGAAATATTGCAGTTTAAAGGCTGGCCCAGATTAAAGTGGGGAGTGACGGACTCCAAATACCTCACGAAGCCTTCGAAAGACTGGCAGCCTCACATACCAACAGCCAACACAGACACGGCATACATTGAGTATAAGGCCAGTAAGGAGGGCACAGTGATGGGTGTTGCGGTTTCAAAAGTTGCCATGTTAACACATTGCCAGGCTCTCAGTCAGGCCTGTAACTACTGTGAGGGTGAAACTCTGGTGAATGTTTTGGACTTTAAGAAGGACATGGGCTTGTGGCATGGAGTTCTCACAAGTGTGATGAACCGAATCCACACCATCAGTGTTCCATATGCAGTAATGAAAGCTTGTCCACTTTCCTGGGTTCAGCGAGTTCACATACACAAAgCACGGGTTGCCCTGGTGAAGTGTCGGGACTTGCATTGGGCGATGATGGCTCACAGAGATCAGAGAGACACCAGTCTGGCCTCATTGCGCATGCTAATTGTTGCAGACGGAGCCAATCCATGGTCGGTTTCATCATGTGATGCCTTTTTAAACGTATTCCAGGCTCATGGTTTGAAGCCAGAGGTCATTTGTCCTTGTGCTACGTCACCTGAGGCCATGACGGTTGCCATACGGAGGCCTGGGGTCTCTGGTGCTCCTCTTCCAGCGAGAGCCATCCTGTCCATGACTGGCCTGAGCCATGGCGTCATCAGGGTCAACACTGAAGACAAAAACTCTGCTCTCACCGTCCAGGATGTGGGACACGTCATGCCTGGAGcatTGATGTGCATTGTGAAACCGGATGGGCCGCCCATGCTGTGTAAAACGGATGAGATTGGAGAGATTGTCGTGAACTCTCGTGCTGGTGGGAACATGTACTACGGCCTGCACGGAGTCACCAAAAACACCTTTGAAGTGATCCCAGTCAATGCTAGCGGCACTCCTATTGGTGAAATCCCATTTGTGCGGTCAGGATTACTGGGGTTTGTTGGACCGGGTAGTTTGATATTTGTGGTGGGTAAGAATGAAGGCTTGCTGATGGTTAGTGGTCGGCGTCACAATGCTGATGATCTGGTAGCGACTGCACTAGCGGTGGAGCCAGTCAAAACAGTGTACAGAGGAAGgaTTGCAGTCTTCTCAGTGACGGTGTTCTATGATGAGAGGATAGTGATTGTAGCAGAGCAGAGGCCTGATGCCAGTGAAGAAGACAGCTTCCAGTGGATGAGTCGGGTTCTACAGGCAATTGACAGTATTCATCAGGTGGGATTGTATTGTCTTGCACTGGTTCCTGCCAACACCCTGCCCAAAACTCCCCTAGGGGGCATTCACATCTCAGACACCAAGCAGCTCTTCCTGGAGGGAGCTCTGCACCCCTGCAACATCCTCATGTGCCCCCACACCTGTGTCACCAACATGCCCAAACCCCGTCAGAAACAACCAGTCGGCGTTGGCCCTGCCTCCATCATGGTGGGTAATTTAGTTGCTGGGAAAAGAATTGCACAGGCTGCAGGCAGAGACCTGGGACTCATAGAGGACCAAGACCTGGTCAGGAAGCACCAGTTCCTTACAGAGGCTTTACAGTGGAGAGCTCAAACTGATCCTGACCACACGCTTTATGTACTTTTGAATGCAAagGGAGTGGCAGTATGTACAGCTACATGTGTTCAGCTTCATAAAAGAGCAGAGAAGATTGCAGCCGCTCTCATGGAGAGAAGTGGTATTAACATCGGTGAAAATGTGGTGCTTTTGTATCCACCAGgtatAGATCTGATCGCAGCATTTTATGGCTGTTTGTATGCTGGTTGTATTCCTGTCACCGTGAGGCCTCCACACCCACAGAACCTCTCTGCCACTCTGCCCACTGTCCGCATGATCATTGATGTCAGCAAGGCTGCTTGCATTCTCACTACTCAGGTTTTAACGAAGATTCTCAGATCAAAAGAAGCAGCAGCTACAGTCAACATAAAAACATGGCCCATCATAATAGACACAGATGACTTGCCTCGCAAACGACCTCCCACAATCTACAAACCGCCCAATGCTGAGATGATAGCCTATCTGGATTTCAGTGTCTCAACCACAGGCATGCTGACAGGAGTGAAGATCTCTCATGCGGCGGTGAGCGCTCTCTGTCGCTCTATAAAGCTGCAGTGTGAGCTGTATTCCTCTCGGCAGATCACCATCTGCCTCGACCCCTACTGTGGACTTGGTTTTGTGCTCTGGTGCCTTGCGAGTGTATATTCAGGTCATCAGTCCATCTTGATCCCTCCTATGGAGCtggagagctctctgaccctgtGGCTGGGTACACTCAGTCAGTACCGCATCAGAGACACCTTCTGCTCCTATTCGGTCATGGAGCTCTGCACCAAAGGCCTTGGTGGACAGACAGACATGCTGAAGGCACGTGGTGTGAACCTGTCATGTGTGAGGAGCTGTGTGGTGGTTGCTGAGGAGCGTCCACGCTTGGCTCTCACACATTCCTTCTCCAAGCTGTTCAAAGATCTTGGACTCTCCATGCGGGCTGTCAGCACTGCTTTTGGCTCGAGAGTTAACCTGGCCATCTGCCTACAGGGTACCACGGGACCAGACCCCTCAACTGTTTATGTGGACATGAAGTCCCTCCGGCATGACCGGGTGAGGTTAGTAGAGCGAGGAGCTCCGCAGTCGCTTCCTCTTGTGGAGTCTGGAACAATTCTTCCTGGTGTGAGGGTGATCATAGTTAATCCAGAAACTAGAGGACCACTAGGGGACTCTCACCTGGGAGAGatttggGTAAACAGTCCCCACAATGCAACAGGATACTACACTATATATGGAGAAGAAAATCTGCAAGCTGACCACTTCAACACTAAGCTGAGTTTTGGAGATCCTCAAACGCTCTGGGCTAGAACTGGATACCTGGGCTTTGTCAAGAGAACTGAACTGACAGACTCCAGTggagATCGTCATGACGCCCTGTTTGTGGTGGGCTCCCTGGATGAGACATTAGAATTGAGAGGTTTGCGATATCATCCAATTGACATCGAAACCAGCGTATCACGTGCCCATCGCAGCATTGGTGAAAGTGCCGTATTCACCTGGACAAATCTGCTGGTGGTGGTGGCTGAACTCTGCGGATCAGAGCAAGACGCTTTAGACCTGGTTCCTCTGGTAACCAATGTCGTATTAGAAGAGCACCATCTGATTGTGGGTGTAGTGGTTATCGTTGACCCAGGTGTCATTCCAATAAACTCCAGAGGAGAAAAGCAGCGAATGCACTTGAGAGACTCCTTCCTGGCAGATCAGCTGGACCCCATATACGTAGCGTACAATATGTGAGTTAAGTCATGGGCGATACAAAGGCTTACCAGAAAGGTGCTATGGAGCCTGGCCTTGCAACTGGGATTGGGTTCTTATAGAGACAGACTTGGCCCTGTTTTTCAGGGATAAGGTGTTACtgaacaaaaattacaaatgagtGAGATGACTGTTTTGGAGAAGGGATATTGTAATAGAAATTCCCTTTTTGCTCACTTCTTTTTTCCCTAGAACCCTCACCCCCCACCCCTTTTCAGTGAAACTCCACTTGCTGTCTGTCCAGCTCCTGGTCATGATTTCAATTTACTTGAattacatagattttttttttctactcaaATGCATTCCTAATCTAGCATTGACTAGCtagtaattttcttttaaataaaatgagctTAAAGCCTCAGTTTGTAAGTTTTCACCTGGGTTGTTCGATTCTGGAATTGTTGGTTCTGATTCCAAGTTTTTGGAATCAATGGAATTGATTCCAGGAGTCAGTTCTCAGAATAAGTATAAAAGGGAGACAACGTGAATTCCTAAAAAGTGCAATATAAACTGTAACTTATAAGATTATGATTACTAGAATGAATGGTAAGAGGtcttgatggatggatgaactaCAAAAGAGTTGAGTAATTATGTAGATTTAGCAATATCAGTTCTATATCTTAAATTAGTGTTGTTACAACTCTTTTGGAATGTGTGTTAATCAAGGTAATGAACAGACTCCCAAAAGCAAAGGAAGGAAGATTATCTTATTTTAGGATCTAGCATTAAATGATTCTGAATTCATTACACGTAATTGATCTGCAACCCAGCTTATTAATGGTGCTGTGTGTTACAgggctttaaaaatattttaggacAGCATTTGGGTAATAGGGGTACTGATATTCCCCTGGTCATTTGTCATTCATCAGATGCTTTTGTCCAAAGCAGCTTATAGTACACAGGGACAGTCCCTCCAGAGAAACCTGGGCTTAAGTGCCTTTCTCAAGGGCAGTATTGATTATAGGACATTTCTGTAATGCTCTGGTTCTTAGAATGCCCTTACCCAGGTTAAAACCGTTTCATCCACCATCGTTTCGGTTAACACACAAATGTGCTACAGAGACTGCATCCGTCAGCTCATTTTGCTCAATTTGCTTTCTGTTCTGGAATcatcatttagcattttaaatcttACCACTGGGGCTTTAACTAACTTTCAGATATGGAGCTATTCTGGttacaaacttattttaatttgttttggtaCACAATCTCACACAATctacagctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagaacaacTACATTCCCTCAACCACCGCAGGTTCAGCATAAGGATAATCATccctattatttttcattatccTTCATGCACTTTATTAGATGAATGCAGATACATTCTGTAACATGGGTTATTAATATCTGTCAACAAGGGCATATGCGTAGTATTATATAATTACTTGTATTACTGAGTAGCATTTGACTTACACAAAAAAGTTCAGGCacatacaaaaaacacacatttttggGGCTTAATGCCAAGTCTAACCTCAGTACCTACATTTAGAAATCGCACATTCCTTGAGTTTACTTTTTAACGTAAAACAGTAAGACAAGAGCATTCAGCAACTGCAAACCTCATCATCACACACCAAGCCCAAACCAAACACCAACTGAGGTACGTATAGCTCTATTTTTGCTCTCATCTAAAGGTGCTTATACACATCAGGACAAGCCATTTAAACCTCTGAATGGCAAAAAAGGAATTCAGGCAtctgtacaataaaacaaaacaactgtaaaataacacaACTCTGTACAAGCAAGCCCCTCGTCAACACCTAATTGTACAAAGGCATCGATTTTACATGTTTGGCAAAGGATCTTTAAAAGGACAGTTGCTGTTTCCTGTACTATAGACATTTTTACTAGGAATGACTAACTTCTTGTAAAccataaataattgtaaattacTGCTTGTGTACAGAAACTCTACTGTACTGTAAGTTAGTTGCTGTATTCTGTCAGATTTTTGGATTAATATTAACTACTGTCAACCCTTCGTAGCTGAGCGGGGGTCTGAAGTTGAAAACTTCTTGTAAATAgcttgctgtttctgttttgttttttttttcttttctggttGATCAGAAACGTGATGGGTTGAAATCTGTCTGTCATGCATTTCTATTTAGAATTCAGATTCAGAAATCTTACGGTATGTACAAGTCTTTAAGATGTAAGCATGATAAAGTCAAGCACTGAAAGACTTTTTTCAGAGTCCTTGCACAACTGATCACTACAGTATGTTAGTCAGACCTCATTCTGGGGTTGTATATGTATGCGTATGTATGGTCACCGCGTGGAAAGGTCATGTGTTTTCCACAATACTTTTTCCCAAATCAGATACACTGTCATGAAACgttctctctcattctcactGTCGTTAATGGTATCAGAGCTGAGCTTATGTGATGAAAGCACAAGCGAGTGAATGAGCTTTTTACATGGGACATTCAGGGAAATAGTGCTTTCCAGGATGGAGAggatattcatttataaatattcactttcatgtttgcaatgattttgttctttaaataactaaatttttttgtcatttacataAGTGTTAACCAAGTCTTAATATGgacaagaaacaaaacaaagcagaaacTTAGACAAAGTCGATTGTCCAGTTAATTGATATGTCATGCCAGCTAAGTGCTGAAGCCAAAAGATACGTTTCACACACTATGCAACCAGCTGCAGTTACAAAGGACACATCCGGCAAAGCAACGTGCACACTTAACCACTATtcaagaaataaaacagatgaTTTGCTTGCTATAAAATGGGAACATGCAACAGTAACTTGACTTTTGTTGTTTAGACAATGCATATTACTTTTCTGTGCTGATTACAACTTTCTGTTCAATTCTCATagcatattttaattacaagaTTAAGATATCACATTCCAGTTATAAGAATGTGATATTTGCGATTTCTGTTACTCATTCATGGATATAAATGAAAGTCATGATTATGCAAGCAAGCGTTTTCCTGCTGGTTcacatctttcttttttgtacatTGGTTATTGTATCTGTTTTATACTCCAATGAAAAACacgaaaaaataataaaaggcttttattttgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68953 lncRNA downstream 6737 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 6737 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 7062 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 161656 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 252773 19149746 ~ 19151694 (-) True LOC122347223
XR_006251216.1 lncRNA upstream 172164 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 357444 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 367045 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 399872 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 407281 19841479 ~ 19842967 (-) False tomm6
XM_043241081.1 mRNA downstream 454 19398856 ~ 19404013 (-) False atf1
XM_043241080.1 mRNA downstream 454 19398856 ~ 19404013 (-) True atf1
XM_043241899.1 mRNA downstream 13803 19342093 ~ 19390664 (-) True scn8ab
XM_043241901.1 mRNA downstream 13803 19342093 ~ 19390664 (-) False scn8ab
XM_043241900.1 mRNA downstream 13803 19342093 ~ 19390664 (-) False scn8ab
XM_043242596.1 mRNA upstream 983 19435181 ~ 19444611 (-) True atf7b
XM_043242598.1 mRNA upstream 983 19435181 ~ 19444609 (-) False atf7b
XM_043242597.1 mRNA upstream 983 19435181 ~ 19443611 (-) False atf7b
XM_043242585.1 mRNA upstream 13830 19448028 ~ 19461259 (-) True larp4ab
XM_043242586.1 mRNA upstream 13830 19448028 ~ 19461257 (-) False larp4ab
XR_006251201.1 other downstream 254737 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 348336 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 686979 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 759333 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1630360 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 119121 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 119121 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 232236 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 408846 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 662191 20096389 ~ 20102458 (-) False srsf3a

Expression Profile