RNA id: XM_043241091.1


Basic Information

Item Value
RNA id XM_043241091.1
length 3739
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC122346467
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19668868 ~ 19676080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgcgcgtgtgtgtatgcgcgTTAGCGCAGAGGGAGCGGGTTCAGTACGTCTAGTACACAGGATAGCGGCACTCATGGGTACTCACAGAAGCACAGCGGCGATTTCTATCACCGTTTAGCACCATTGAAGGTGCGACATTTATTCCGGGCACGTACCTGACAGCGGACTGTCCTGAAGCCCAGCGGAATCTCGCGCTCTAgtagagtgagtgtgagagagagagtagcGCGCGCTGAACGGACCGCAGTGGAATGTAGCGGGGATTCCCGGCGCGCGGGGCAAGATCTGTCAATCATTCATCAACGCCCCAAGAAAACACCTGAGTAGGTGGAGCATGGCCAGTAGGAGTGGCTGGCGTTACTATGCCTGAAGGCACGTGGCGATGGTGTCCATGGAGACAGATGGCAGCTTCACTGGGGGCCACGGTTTGTCCCTCTTACAGGCTGAAGATAGCGTGGGGACCGGACTCGCTCAGCAGGAGGGGACGTGGCTTGGCTTCCGGGCTACAGTAAGTGCTGTGCTGCTGCTGGAGCTGCTCCTGGGAGTGGGTGGCAATCTGACCGTGCTGGTGTTATACTGTGGTCACTGCAGCCTGTTGGAGTCCGTCAGTCATGCCGTCACGCTCAGCCTGCACACCCTTGACCTGCTGCTTTGTCTTCTCTGCCTGCCGATCACTGCCACGCTCCTTATTCTGGGTGGAGCCTCGGTTCCTCACCACGCCCTTCTCTGCTGTCTCCATGAATCGGCAGCCAGTTTCGCCAGCGTGGGCACCGCACTTAACCTGCTGCTCATCAGCTTAGATCGCTATGACATCAGCGTCCGGCCAGCAAATCGCCTGCTGACGCCTCGAAGGGCCACCATTTTGCTTGTTGGAGTATGGGCGGTTTCTTTAGCCGTGCCCCTCCTACCATTTGTGGAGGCTGGGTTTGTTTCGGGGCAAGGAGAGGGAGTGTTTATGCACTCCAATAGCACTGTGCTTTGTTCAGAGTGGGGAGGAACTCTACAGGCTCATCTGTTACTACAAGTTCCCGTGTTCCTGTGCTCTCTTGCTGTGATGCTGTTTACATACTCGCGAATTCTTCAGGCACTGCGCATCCGCATCGGACGCACACCGAGGCCCCATCGAGACAGCAAACGGCCTGTGCATCGCCTCTGGTTACGCCGTAAAAAGTCAACAAGGTCACCGGATCACACAACGAGGAACACACCCACCTCTCCACCGCCGCTTTCGACAGGGCCGCTTATCGCCTCAGATACAGTTACAACAGTAACCATCAACACTGAGACGAACACTCCCTCACTCACCACGCCTCTTAGCCCCACCCCTACTGTATCTGTGATAACCTCGCCTTTAAGCCCCACTCCCACTGCTTCAATGGTAACCACGCCTTTGAGCCCCGCCCCGTCTGTATCCATCATAACTAGCCCTCACATCCCCACCCCTGCTACATCATCAGTGGCCACGCCTTTGAGCCCCAAGCCCACTGTATCCACAGTAACCACTCAGCTAAGCCCCGCCCCTGTCCAGGGTCCTCCCAGCATGGGCGTGGGAGCATCAGTATCGGCCATTTTGGCTCTGCGTCGAGCAGTTCGGCGCCATCGAGATCGGCGGGAACGTCAAAGGCGTGTCTTTCGCATGTCCGTCATCATAATCCTCTCGTTTCTGCTATGCTGGGCGCCTCTCTCCATCATGCCCCTTCTCATGCTGGCCATCGGgccctctgattggctggaacGCCTGAGACTCTGCTTCCTGGTGCTTGCTTATTGGACAGTAGTGCTGCATCCGCTGCTGTATGCATTTACACGGCAAAAACTGCGCAAAGTTCTACATACCCGTCTGCGCAGGCTGAAGCCGCAAAACACGCAAACTCGCATTCGCACTAATACTAGGATCCGCCGCAAGCACAGGGCAGATTGCAGCGATGCTACTGACCGCTGCCTGACAGAGGCTGTTAgagagtgagtgtttgtgtgtctgtgacaTATAACTAGGCTCACACGGAATCTGAGTGCACATTCACTTTTGTTCGTAtgtcattttcttgttttttttctgaaatattttggataatttattcatgctttcAGCTGCTAATATGCATATGTCCATTTAACATATTTCACCATGTTTAAACCCAAGGCCCTAAccatattttgaaaattgtaaGAGAATTAAgggaacaaagaaaaaaaagaagaactaggatttactgtaaaattgtcCCATtgaaatatttgcaaataatattctattttattattattagacacATTCACTTAAGGACCAAAAATACCACCTGATTCTATGGGAAGATGAGTTACTTGAAAActtaatattttctgaaaaaaagcatGAAGGCACCCCTCTAAAAAACTATGAATGAGTAAGGAATGTACAAATATCTATTTGCGAAAATGAGAAATAGATAAGAATttccataaaacaaaatgtcaaataaaaataaaatataatttagctaAATTGTCTGCCTAATATGCTGAAAACAGCTTATGTTTCTTGTATTCAGGTGAATATGATTTATGAATCAggtaaataaattaacatttttgtattaacaGTTTAGCTTGTTAGCTACTTATGTCTTTATACTCTTTTACCTCTAAACTAAAGCATTGTGCTAGaattctgttaaaaataaagtctttCATGATTTGATTGGCCATCACAATTATTTTGACACTGACGTGCACTGTTAGTCCCCTGAGGCAGACTAgtctaaaaatgtaactttttgtcATCCTACCAACAAACCGAGAAGTGTGTAATAGAGCGCATCAAAAGAGCATCAAGAATATCAAATGCTCCATTTGGTAATATGGTCATGTCTTATTATATAGAGACTTGTGGTTACGGCCCTGTTTAAATCCATTTCTCAGATTTCCCCCACAGATTTGTGcagaaaaaagcaaagaaaaagagaaagtcaGCAGATTCCGCCTGGGCCTATTTATGACTGTAGGTAAAAGGTGTGTGCAGGAAACCATTAATGTGTTAGATGTGTTAGATGATATGTGTGACTCGCTCACCTCTATAAAGGATATTAAAAGACGTTGGTAGGTCTCTATTGTCCACAAGTGTGTAGTATCATTGGCAACTAATCAGCACAGGGTTTCTAAAGCACACTGAACTCTGAGGTCAGCAGGGCACTGTCTAATTAACCAGTAGAGCACAAATATTCCCATGGTGCTAAGGGGAAAAGAGcgagattgagagagagagcgtaCCTACAGGTGTGAGTCTGCCAGAGGCCATGTGCAATAAATTCCAAATCCAGGTTATGCATCGCATGATTTCCATATAAATTGATACCAACTTATTGGCATTCATTGTGTGGTGTAAAAAGTAACCGCCTATCCACCAGTACACATACATGTtcacatattttacattgtcCTTCTCACTGATAGTCTAGAGGGCAATAGATTTATcattgtgtttattaatttatatgatCAGGGATGTAAATAGTCACTAATATTTCTGTGGTTTGAAACTGCAGCCAATTTGAATTCGGCTCTACCAAGGGCATGCATACTGGTTCGATCAGTTGACAAAACAACTTTTACAAagtctaaatttatttattttatttgtgtccCGTATGTATATATTGTCAGTGCTGTATATTAATTCAGTTTGAGATGAGTATTGTATTACTTTACAATAGAGGAGCAATAAGTCtgaattacagtaataaaaagaTTCAGCCTCTTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251216.1 lncRNA downstream 61812 19606362 ~ 19607056 (-) True LOC122347383
TU68953 lncRNA downstream 271138 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 271138 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 271463 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 426057 19212639 ~ 19242811 (-) True G46509
TU69118 lncRNA upstream 115562 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 125163 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 157990 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 165399 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA upstream 165761 19841841 ~ 19842967 (-) True tomm6
XM_043241744.1 mRNA downstream 30922 19633179 ~ 19637946 (-) True ip6k2b
XM_043241807.1 mRNA downstream 41391 19622555 ~ 19627477 (-) True sec61a1
XM_043241808.1 mRNA downstream 47785 19620157 ~ 19621083 (-) True chchd4b
XM_043242485.1 mRNA downstream 49050 19613104 ~ 19619818 (-) True uroc1
XM_043242557.1 mRNA downstream 56414 19609800 ~ 19612454 (-) True si:dkey-197j19.5
XM_043242566.1 mRNA upstream 1679 19677759 ~ 19736497 (-) False col7a1
XM_043242565.1 mRNA upstream 1679 19677759 ~ 19736497 (-) False col7a1
XM_043242567.1 mRNA upstream 1679 19677759 ~ 19736497 (-) False col7a1
XM_043242563.1 mRNA upstream 1679 19677759 ~ 19736497 (-) True col7a1
XM_043242564.1 mRNA upstream 1679 19677759 ~ 19736497 (-) False col7a1
unassigned_transcript_1266 other downstream 2362 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 112937 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 112937 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 519138 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 612737 19055146 ~ 19056131 (-) True G46478
TU69304 other upstream 166964 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 420309 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 485360 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 853099 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 3063892 22739972 ~ 22750947 (-) False tardbpb

Expression Profile