RNA id: TCONS_00010216


Basic Information

Item Value
RNA id TCONS_00010216
length 1148
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_005324
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20354691 ~ 20362061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGCACTTGATGGAGCACAATGCCGGTGGAAGCAGAGAAGCTGGAGCTCGAAGAACTGGACAAAACCTTGTTAAACAGAGACAAACCAAAACCTCAGAGCAAATACGAAAGAATATTCCAGCCATGCATTGCTGAGCTGGTGGGCACGACATTTTTTGTCTTCATTGGCTGTGTGTCTGTTATTGAAAATGTGGAAGCAGCTGGAAGACTGCAGCCAGCACTTGTGCACGGGCTGGCAGTGGCTGTGCTGGTGGCATGTATGGCGGAAATCAGCGGATCCCATTTCAACCCTCCGTTCACCATTGCTATCTGGTTATGTGGAGGAATGCAGCTGACGATGGTTGTCCCGTATCTTATCAGTCAGCTTATCGGAGGTGTACTAGGAGCTGCAATGTCAAAGGTTATGACTTCAGATGAAAACTACGCGAACGCTACTGGAGCTGCATTTGCTGTTCTGAAATCAGATGAGCAGCTGGGGAAGGTGGTGTTTGCTGAAATGGCCATGACGTGTCTGGTGACTCTGGTGGTCCTGATGGGAGCTGTTAACGGAAAAAGCAAAAGCCCAATGGTGCCCTTCATGGTGGGCTGCACCGTTATTGTCAATATTCTAGCAGGaGGAGATGTTTCTGGCACCTGTTTGAACCCTGCGAGAGCTTTTGGACCTGCACTCATGGCAAACCACTGGACTTATCACTGGGTTTATTGGGTCGGTCCGTTGGGAGGTGGTCTGGTGGCTGCCGCTCTTATGAGGCTTCTGCTTGGAGATGAAAAGCTACGGGTTGTAATGAAATAAAACTGGAGCTTGACATCAGCATGTTAAAACCTTTCTACACAtgacatcatcattattaatagaGTGTAGATATTTCTAATATCTATTCTGTTTAGTACTGTGGGTTAGCACGCTTAACTTTAATTATAAatggagatttttttaaatgttttttttttccaagcataaaatgaaatgacataaaatagtttttttttcaggctGTTGTTTagaatttacttgaaataaacattattagatatttttatattaacattgTGTTATAACTATATCTCtgttatctttattttaattggcttattttaaagtaattatgTATTATTgagtcattattattaaatatgttttattgaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0015250 water channel activity molecular_function
GO:0015267 channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1802 Enables urea transmembrane transporter activity and water transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; intestine; kidney; mid intestine; and posterior intestine. Orthologous to human AQP8 (aquaporin 8).

Ensembl:

ensembl_id ENSDART00000105952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011121 lncRNA downstream 20430 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00011120 lncRNA downstream 289312 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00010204 lncRNA downstream 1073130 19278390 ~ 19282009 (-) True XLOC_005315
TCONS_00011119 lncRNA downstream 1900732 18453207 ~ 18454407 (-) True XLOC_005298
TCONS_00010174 lncRNA downstream 1940623 18413442 ~ 18414516 (-) True XLOC_005297
TCONS_00010219 lncRNA upstream 44525 20406586 ~ 20409746 (-) True XLOC_005326
TCONS_00010222 lncRNA upstream 218505 20580566 ~ 20584439 (-) False XLOC_005327
TCONS_00010223 lncRNA upstream 218828 20580889 ~ 20581988 (-) True XLOC_005327
TCONS_00011123 lncRNA upstream 1801969 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00011122 lncRNA upstream 1801969 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00010214 mRNA downstream 4510 20349865 ~ 20350629 (-) True XLOC_005323
TCONS_00010213 mRNA downstream 14596 20339413 ~ 20340543 (-) True XLOC_005322
TCONS_00010212 mRNA downstream 51701 20227395 ~ 20303438 (-) True XLOC_005320
TCONS_00010209 mRNA downstream 234428 20098845 ~ 20120711 (-) False XLOC_005318
TCONS_00010217 mRNA upstream 4048 20366109 ~ 20373058 (-) True XLOC_005325
TCONS_00010218 mRNA upstream 16315 20378376 ~ 20409794 (-) False XLOC_005326
TCONS_00010221 mRNA upstream 215052 20577113 ~ 20584413 (-) False XLOC_005327
TCONS_00010224 mRNA upstream 243130 20605191 ~ 20616160 (-) True XLOC_005328
TCONS_00010225 mRNA upstream 290896 20652957 ~ 20658285 (-) True XLOC_005329
TCONS_00010211 other downstream 165853 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010183 other downstream 1616610 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010161 other downstream 2648238 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 3356697 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 3453380 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010220 other upstream 213579 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 1207722 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 1310888 21672949 ~ 21680620 (-) False XLOC_005333
TCONS_00010242 other upstream 1869085 22231146 ~ 22238004 (-) True XLOC_005336
TCONS_00010246 other upstream 1988571 22350632 ~ 22355405 (-) True XLOC_005338

Expression Profile

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