RNA id: XM_043241126.1


Basic Information

Item Value
RNA id XM_043241126.1
length 974
RNA type mRNA
GC content 0.53
exon number 1
gene id sox14
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11850258 ~ 11851231 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGCCGTTTTCCTACTCCTCCGGCTTTCCAGAAGTGGCATGATCCGTGTCTGTCGGCAGGACAGGTGAATACTATTTTCTCTTGGTTGGTcgaagaacttttttttttgttgttattttaacagGGAACCGTAAAAAATGTCAAAGCCGGTAGATCACATCAAGAGACCCATGAACGCCTTCATGGTCTGGTCAAGAGGCCAGAGGAGGAAAATGGCTCAAGAGAATCCCAAAATGCACAATTCAGAAATAAGCAAAAGACTCGGCGCCGAGtggaagctgctctctgaatcCGAGAAGCGACCGTACATCGACGAGGCCAAAAGGCTGAGGGCTCAACACATGAAAGAACACCCAGACTACAAATACAGACCCAGGCGCAAGCCCAAGAACCTCCTCAAGAAGGACAGGTATGTGTTTCCTCTGCCCTACCTGGGCGACACGGATCACCTGAAAGGACTTCCGGTCTCCGCCACGGACTCGCTCTTAGGTTCCTCGGAAAAAGCCCGCGCGTTCCTGCCTCCCACATCAGCCCCTTACTCCTTCCTCGACCCGAGCCAGTTCAGCTCCAGCGCTATCCAGAAGATGACAGAGATGCCCCACACGTTGGCCACCAGCACTTTACCTTACGCATCATCTCTGGGATACCAGAACGGCGCATTCGGGAGCCTGGGCTGCCCCAGCCAGCACACCCACACCCACCCGTCGCCCACAAACCCCGGGTACGTGGTGCCGTGTAACTGCACCGCATGGTCGGCGTCGAGTTTACAGCCGCCTGTTGCCTACATACTGTTCCCGGGTATGACCAAGAGTGGGATTGACCCGTACTCATCAGCACACGCCGCTGCTATGTGACTCCACcgctaaaaaacaaacaaacggtCTCCTCTTTTGAAAACTTGAATACAGCAATGCATGTACATAAGAAGAGAGGAATGAGCAAGACATTTATACTGAGGCCGCGTGGACATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 421495 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 607752 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 608226 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 610794 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 612060 11237962 ~ 11238198 (-) True G44452
TU66210 lncRNA upstream 298603 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 298603 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 298603 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 298603 12149834 ~ 12437749 (-) False G44705
TU66217 lncRNA upstream 298603 12149834 ~ 12217207 (-) False G44705
XM_043242737.1 mRNA downstream 64096 11734816 ~ 11786162 (-) True hs2st1b
XM_043242736.1 mRNA downstream 141778 11695648 ~ 11708480 (-) False lmo4b
XM_043242735.1 mRNA downstream 141778 11695648 ~ 11708480 (-) False lmo4b
XM_043242733.1 mRNA downstream 141779 11695648 ~ 11708479 (-) True lmo4b
XM_043241801.1 mRNA downstream 369065 11449837 ~ 11481193 (-) False pkn2b
XM_043241418.1 mRNA upstream 122234 11973465 ~ 11998495 (-) True hdlbpa
XM_043241419.1 mRNA upstream 122234 11973465 ~ 11997910 (-) False hdlbpa
XM_043242753.1 mRNA upstream 204661 12055892 ~ 12062418 (-) False stk25a
XM_043242757.1 mRNA upstream 204661 12055892 ~ 12062418 (-) False stk25a
XM_043242754.1 mRNA upstream 204661 12055892 ~ 12062418 (-) False stk25a
XR_006251151.1 other downstream 780800 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 780801 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 1133517 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 1705111 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1822623 10025578 ~ 10027635 (-) False c6h17orf67
unassigned_transcript_1087 other upstream 121249 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 121478 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1119852 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 1120247 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1569416 13420647 ~ 13420718 (-) True trnaa-cgc

Expression Profile