RNA id: XM_043241140.1


Basic Information

Item Value
RNA id XM_043241140.1
length 3339
RNA type mRNA
GC content 0.45
exon number 19
gene id tbc1d23
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13390703 ~ 13407082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACGACACAGTCTGACGTGGAGCGTCACCACAGCAATGGCGGATGCTGTAGGGGAAGTGCTTGAAGGCAGCTGgaCTCATGACCTGGCTGACGCTCTTGACTCAGCAGACTGTGATCTGGACAGTAACCAGGATGGTGTTATCCAGGTCCGAAACCTACCCCCACAACAGCGGGCCAAGTTATGGATGATTGCTTTGAACGTGTCTGGTAAAGGAGATAGTCTGTCCTCATGGGATGGGGCTTTGGACCTACCAGAACAGACGCTCATTCACAGCCGCAGTCAGCAGATCATTGAGGAGCTAGGGTTACCAGCAGAGGAAGGACGGGACCTGGTATCGGATGTGGAGTCAGTGATCACCTTTTACTGCAAGTCCAGAAATGTCACCTTTACTCCAGATCTTAGTTGGCCACACATCCTCAAACCACTCCTGGGCTTACAGCTGTCCCGCAAAGACCTCTACAATTGCTTCTATGCcatcatgaataaatatatcCCACGAGACTGTGTTGCAAAAGGAAGACCATTTCACCTCTTCAGACTCCTGCTGCAGTACCATGAACCTGAATTCTGCTCATTCCTGGACACAAAAAAGATCACTCCTGATTCTTACGCCATCCACTGGCTGGGCAGTCTATTTTCTAGTAGCTGTCTCCCTGAGGTGTCACAAGCTTTATGGGATGTTTATTTCCAACAGGCTGACCCTTTTCTCATCTTTTTCCTCATGCTCATCATCCTTGTCAATGCCAAAGATGGCATCCATGAAGCAGAAAGCAAAGAGGAAATTATCAGTAAGCTGAAGCATTCGCCAGAATTTCTAGATGTAGAGGACCTTGAAGACTTGTTTTCTTTAGCACAGTATTACAACAGCAAGTCGCCTTTGTCTCTTAGAAAGGAGAACCATAATCTGTTTGGCAGCAGTCTGGTGGCTCTGAAGGAAGAAGACATGGACCTGAGTCAGGCTCTCTGTTTGCCTGTATCAGTCCCTGAGATCCTGCAAGCCAACCAGCTACAACCTGAGGGCGTTAGGTTTTTTGTTGTCGACTGCCGTCCTGCTGAGCAGTACAATGCTGGTCACCTCTCCACTGCCTTTCACCTGGACTCTGATCTGATGCTTCATAATCCCTCTGAGTTTGCCCTGTCAGTGAAGTCTCTTCTGGAGGCACAGAAGCAGTCTCTGGAATCAGGCTCTGTGGCAAGCGGAGAGCATCTGTGCTTCATGGGCAGTGGACGTGAAGAAGAGGACATGTACATGAACATGGTGCTGGCACACTTTCTACAGaaaaataaagagtttgtAAGCATAGCGAAAGGTGGATTCATGGCGTTGCAGCAGCACTTGGCAGATATTAATGTTGAAGGGCCAGATAATGTTTATGTTCACTGGATTGTGAGCACCTCAGGATCCCACAGCAGCCTCAGCTCAGCTGATGGGGAACTGAACGCAGATGGAAAAGGAGTTAAATCACTTGTCAACAAAATGACCTTTGCCCTGAAGTCAAAGTCAGTTAATGTAAAAGAGAAGGTGATCAGCTTCATTGAAAACACTTCCACGCCGGTGGACAGAATGTCTTTCAATCTACCCTGGCCAGACAAGGGAATACTGGATCGGCACATAAGCAGCAGTGATCGGGTGGGGAAGCCATACAGGGGTGTGAAGCCTGTCTTCAGCATTGGCGATGAGGAAGAGTATGACACAGATGAGATTGACAGCTCATCAATATCAGATGATGACAGGAAAGAGATTGTCAATATTCAGACTTGGATCAACAAACCAGATGTGAAGCACCATATTCCATGCAATGAAGTTAAAGAAACTGGTCACATGTTCCCAAGCCATCTGCTGATCACTGCAACACACATGTATTGTTTAAGAGAGATCGCTGCCCGGAAAGGTTTTGCTTACATCCAATCCAGGCAGGCCCTAAACTCTGTGGTGAAGATCACCTCCAAGAAGAAGCATCCAGAACTTATTACTTTTAAGTTCGGCAACAACAATACTGCAGGAGTGGAGATTGTAGCTGTGGAGAGGTATTTAATTCCAAACGCTGGTGATGCCACTAAAGTCATCAAACAGCAAATCATGAAAGTTTTGGATGCTATGGAGAGCTCTTAATGACAGATAAGTCAGAGATGTCACGCTCTGGTCATCCAGGAGACAACCACAGCTCCAACCAAAACCGCCTGAAGGGGAAGAAGGGAGTAGAGCATTCCCACACAGTTTCTTGTCATTATTGCCCCTCccccacctcctcctcctcctccctggGACACTGACGTGGAGGTTCTGTCATGACTCTTTGGGCACGCTGCCATCCTGATTGACAGACGTTCTAAAACTTTGGGCTCGGAGCGGTCAACATGAGAAATggttattttgttcattttgcttTATGATTATAATTTGTGTTTGGAGAAGCTGACCTAATTAAGCAAATTAGATTTATTATCGCTCCTTTATCTGTCTCGAGCCTTAATGAGCTATAGCTTTTTATATGAGTCTCAAACAGCTCCTCTGGATGAGAGTATGGTTTCGGATCCTCAGTCAAGGAACTTCATTGCTCTATTTGCTTCAGTGTTTGAAGTCACTAATTCTTTATCCATCGAAGATGTAAACGTCATATATTGCTGCATACTTGTGTAACTGAGATGAGTTCGACGTATTTATCAGAGCAGTGTTTTTACAGCAACCAGATTCACCAGGAGCCTCATCACAGGCGTTGAGGTGAATAAATATACTTCATTTTCATATCTGGAAAGTACGTTACCCTTACAGGATGCCACTTGCACAAGCGGTTGTGACACATGAGTACTTCCATGCATCTGTGCTGCTCTCTGTGCAGGTTGACTTAAACTCCCTGAAATTATTAGAAACGTTTGCCGCTTTCTGGTTCCACGAAATTTAGTGATAGTAGCTTTAAAGGGAACTGGTTTGCGAGATAGTTAATGGCCAAGTTCACCAGATCCTGTATTGAGAACCTGACGTTTAAGATGCTTATTGGGAATAGCTCGTgtgtaatacaatatatattgaGGCTGAAGCACTAAAGAAAAAATGGCTTGTGAATCCAGTAGCTGTCAAAACAAGTCAAGTGAATGTAAGAAAATCTAAAGCTAACGTAAAGAGTGAGGATAATGTAAAAAACTAGTTTGGTCAGTTAGTCACTATGCAAGtcctaaaaattaaaacatcttaaGTGACAATAAGAGTTCCTTATGTCCCCAACCTAAAGAATATTCAGAGGATTGTTCCCAATGTTCAACTTTTTAACCTTTTGTTTCTGTTAAGCCACAGAATGCTATcgctatatttaaataaatcaaaatgaggTTCCACCA

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 33182 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 35920 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 36523 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 37053 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 37634 13352462 ~ 13353069 (-) True G44938
TU66619 lncRNA upstream 129862 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 286256 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 290417 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 311120 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 416590 13823672 ~ 13835591 (-) False LOC122347350
XM_043241667.1 mRNA downstream 281479 13086100 ~ 13109224 (-) False bcl6aa
XM_043241666.1 mRNA downstream 294221 13086100 ~ 13096482 (-) False bcl6aa
XM_043241669.1 mRNA downstream 297167 13086100 ~ 13093536 (-) False bcl6aa
XM_043241668.1 mRNA downstream 297167 13086100 ~ 13093536 (-) False bcl6aa
XM_043241670.1 mRNA downstream 297355 13086100 ~ 13093348 (-) True bcl6aa
XM_043242215.1 mRNA upstream 484 13407566 ~ 13416487 (-) True tomm70a
XM_043242546.1 mRNA upstream 64814 13471896 ~ 13478911 (-) True glmnb
XM_043242777.1 mRNA upstream 82868 13489950 ~ 13495596 (-) True gfi1ab
XM_043242771.1 mRNA upstream 89053 13496135 ~ 13535440 (-) False evi5b
XM_043242768.1 mRNA upstream 89053 13496135 ~ 13535440 (-) False evi5b
unassigned_transcript_1091 other downstream 419154 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1090 other downstream 419549 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1088 other downstream 1417923 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 1418152 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251152.1 other downstream 2321246 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1092 other upstream 13565 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 13747 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 14238 13421320 ~ 13421391 (-) True trnaa-ugc_1
unassigned_transcript_1095 other upstream 14542 13421624 ~ 13421695 (-) True trnaa-cgc_2
unassigned_transcript_1096 other upstream 14723 13421805 ~ 13421876 (-) True trnaa-cgc_3

Expression Profile