RNA id: XM_043241147.1


Basic Information

Item Value
RNA id XM_043241147.1
length 3417
RNA type mRNA
GC content 0.47
exon number 14
gene id tp63
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13350521 ~ 13390651 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACATGGACCAGAAATGGAATGGGTGGGGGTTGTTGCTTAATATCTATATCCTAGCAACTGAAGGGGTATGATACCATGTCCAGTTGTTGTCAGGGATTGGTCAGCATGTTGGCATTGACGCCGCCCCTTTGCTTGTGTGCTGTAGAAAGattaaaccaaaattaaaacatcCTCCACACTTGATTCACTCCTGTGCACTTGACCTTCTAGCACTTTAATCTGCCTCagagtttcttttttgtttgtttttcatgtttttcatttatttgtaactCCAGATCTGCTGTAATACATGTGCTTGGGCCACTTGGCGATAACCTTGACGACCTCAGTAAAGACCCCAGTCTGGCAGTATGACCTCTCCTTATGCAGCAGTACAGTTCTGCCCAGAGCGAGCTTTTCAACGACTCAGAGAGCCAGCAGCAGCCTGTCTTTCATGGGCTGAAGGTTCTTTCCTGGCCTCCATGTCACAAGGCCAGGGCTCCCAGGGTACGGATATCCTCGGACAAGACGTCCTCAACCAGCTGCTGGAGATGCTGGACCAGTCTGCGCTACATTCAATGCAGCCTATCGAGCTCAACTTTTCTGAGGGCTCTGCAGTTGGATCAGCATCCAATACCATACAGATTAGTATGGACTGCATCACGATGCGTGGGCCTGAGGAGCCCCTTACACCACAGTATACAAGCCTGGGGCTTCTCAACAGCATGGATCAAAATGGTGGCTCCACCTCCACCAGCCCCTACAACAACGAGCATGCTCAGAACAACGTAACGGCACCATCACCCTATGCCCAGCCCAGTTCCACCTTCGAGGCCCTTTCTCCATCACCTGCCATCCCATCCAATACAGACTATGCTGGCCCACACACCTTTGACGTGTCCTTTCAACAGTCCAGCACAGCCAAGTCCGCAACCTGGACGTACTCCACAGAACTGAAGAAGCTGTACTGTCAGATTGCCAAAACATGTCCCATTCAAATCAAGGTCCTCACCAACCCACCCCAGGGTGCAGTTATACGGGCCATGCCTGTCTATAAGAAAGCAGAGCATGTTACCGAGGTGGTCAAACGCTGCCCGAACCATGAACTGAGCAGAGAGTTCAATGACGgTCAAATAGCCCCACCCAGTCACCTGATCAGGGTTGAGGGAAACAGTCATGCTCAGTACGTGGAGGATTCCATTACTGGGCGTCAGAGTGTGCTGGTGCCTTACGAGCCCCCTCAGGTGGGCACAGAGTTCACAACCATCCTGTACAATTTCATGTGTAACTCCAGCTGCGTCGGCGGAATGAACAGACGCCCTATCCTCATAATCGTCACTTTGGAAACCAGAGATGGTCAGGTTTTGGGTCGACGGTGTTTCGAGGCTCGTATCTGTGCGTGTCCGGGACGCGACCGCAAAGCCGATGAGGACAGCATCCGTAAACAGCACGTCAGCGATGGCACAAAGAGCAGTGAGGGTACGAAACGCCCTTTCCGTCAGGCCTCTCACCTCTCTCAGCTAAACTCCATCAAGAAGCGAAGATCCACCGATGAGGAAGTGTTTTGTCTGCCTATTAAAGGGCGTGAAATCTATGAGATTTTGGTGAAAATCAAAGAGTCTTTGGAACTCATGCAGTTCCTCCCTCAGCAGACTATTGAGTCAtacagacagcagcagcagaaccTACTGCAAAAACAGAGCTCTCTGCCACCCCAGCCTTCCTTTGGTTCCAGCTCACCCACCCTCGGCAAGAACAAACTGCCTTCAGTCAGTCAGCTCATCAACCCCCAGCAACGCAACACACTCACCCCATCCAGCATGGCTGGAGGACTAACTGACATGACCCCTCCCATGATGGGCGGCCCTGTCCCCATGAACACAGACATGAGTGCCTTGAGCCCCACCAACCCCCTGCAGCCTCAGTTACAAATGGTGCCCTCTCACTGCACGCCTCCACCACCCTACCCCATGGACAACAGCATTTCCAGTTTCCTGTTGAGGCTGGGCTGCTCGGCCTGTTTGGACTATTTCACAGCCCAAGGACTGACCAATATCTACCAGATTGAGAACTACAACTTAGAGGACTTGTCCAGGCTGAAGATTCCCACAGAATTCCAGCACATCATCTGGAAAGGAATCATGGAGTACCGGCAGACCATGGAGTTTTCTCCACCTCCCCACATCTTGCGCACCTCTAGCGGGACGTCCACCGTCAGCGTGGGCTCCACCGAAGCCAGAGGCGAGCGTGTGATCGATGCCGTGCGTTTCACTCTTCGTCAGACCATTTCATTTCCTCCGCGAGACGACTGGACCGATTTCTCTTTTGACCTGGCACCAGATTCTCGCCGCAACAAGCAACAGCGTATCAAGGAGGAGGGAGAATGAACGTAGTGCATCACAGTTCACTATAATACATGTGCATAGAATGTCAACAGTGCACAtttactgtatacacacacacacactcacgcgctGTTTTATATTAACACACTTGGTGTTGGTCCAGATCGTTTCACAGTTTTCCTCTGCAagtgatgattaaaaaaaaactgtgagcCTCATAGTCTAGTTCACTTAAACTTAAATGGGCAgataaaatgcacttaaagtCCTTTATGGTTTCATTTTTCTTCTGGTGGATTTAGCTCTGGTTGTCATTTCAGACCCctttattaaacacaaacagctGTAGCTGAGGGGAAATGGTGCTTTgctaaattgacatttttacgATTTCTTGAGACAAAGCACTTAAGAAATGCTAACATATTGTTACTACTTGCAAAATACACACTGAACTTTTAgggtttcctttttttttttttacgtggcCAAAggtatatttctgttttttttttgttttggtataaaaaaaacttcctcCCAGCCGGAGCTTTAGTGTTAATTCTATTCTTTGTTGTGATGATCATTCCTTGCGGTTGAACAAtgtctttgtcttttgttttacatgttgACATTTGTCAGCTTTGATTGTATGTACTTCAAATCGCACATGgttcttttctttattcttcACAGAAAGTGTTATTCATCCAGGGTGTAAGACTGATGTTGTCATGTAGCTTTTATGTACTGCTGTAAACCCTTCTTTGCGAGCTGCAAGTACTTTAATACTATTGCATTGCAGCGTGTAAGTATTGAATTGCTGACAGTTGTGGTAATGCATAGAAATGCTGTTGACCTGTAAAAGTAAGCGTGACTTACATTGCTAATGTAATGTGgcttcagtatttttttaaaacaaatttccaCTTCACTTGATACTTGTTAGCCTGTTGTGGCAAATTGTACAGATTTTTATTACGCTTTCATGCCAACGGAGTAGACAATTCTTTATCAaacttattgtaaatattttgcaatgtacttattttgatataaacaataaaacagatatCATGTAACATTGA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051262 protein tetramerization biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66461 lncRNA upstream 2072 13350198 ~ 13350433 (+) True G44884
TU66458 lncRNA upstream 5358 13346880 ~ 13347147 (+) True G44881
TU66456 lncRNA upstream 6561 13345264 ~ 13345944 (+) True G44879
TU66453 lncRNA upstream 9665 13342476 ~ 13342840 (+) True G44876
TU66451 lncRNA upstream 13200 13339034 ~ 13339305 (+) True G44874
TU66472 lncRNA downstream 8371 13399022 ~ 13399548 (+) True G44890
TU66480 lncRNA downstream 26108 13416759 ~ 13416972 (+) True G44898
TU66481 lncRNA downstream 26907 13417558 ~ 13417840 (+) True G44899
XR_006251135.1 lncRNA downstream 199234 13589885 ~ 13594537 (+) True LOC122346508
TU66580 lncRNA downstream 199335 13589986 ~ 13594601 (+) False LOC122346508
XM_043242168.1 mRNA upstream 18931 13314057 ~ 13333574 (+) True tprg1
XM_043241840.1 mRNA upstream 73325 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA upstream 73325 13127515 ~ 13279180 (+) False LOC122346939
XM_043241811.1 mRNA upstream 270386 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 272459 13065838 ~ 13080046 (+) True inpp5d
XM_043242547.1 mRNA downstream 78753 13469404 ~ 13471933 (+) True LOC122347353
XM_043242548.1 mRNA downstream 78753 13469404 ~ 13471933 (+) False LOC122347353
XM_043242778.1 mRNA downstream 145860 13536511 ~ 13542567 (+) True rpl5b
XM_043241553.1 mRNA downstream 207888 13598539 ~ 13607514 (+) True atp1b1a
XM_043241549.1 mRNA downstream 248343 13638994 ~ 13644273 (+) True zgc:172121
TU66125 other upstream 243139 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 270386 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 571585 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1260050 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1342396 12002148 ~ 12010109 (+) False LOC122346564
TU66465 other downstream 3578 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 581522 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 690282 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1845560 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1968210 15358861 ~ 15459386 (+) True G45419

Expression Profile