Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043241151.1 |
| length | 2960 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 12 |
| gene id | tp63 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_056704.1 |
| NCBI id | CM032073.1 |
| chromosome length | 27473687 |
| location | 13350521 ~ 13390651 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0010332 | response to gamma radiation | biological_process |
| GO:0042771 | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | biological_process |
| GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator | biological_process |
| GO:0031571 | mitotic G1 DNA damage checkpoint | biological_process |
| GO:0070059 | intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0010165 | response to X-ray | biological_process |
| GO:0051262 | protein tetramerization | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0034644 | cellular response to UV | biological_process |
| GO:0043523 | regulation of neuron apoptotic process | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0030425 | dendrite | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0002039 | p53 binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003684 | damaged DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU66463 | lncRNA | upstream | 9508 | 13357403 ~ 13357988 (+) | True | G44886 |
| TU66462 | lncRNA | upstream | 10872 | 13356269 ~ 13356624 (+) | True | G44885 |
| TU66461 | lncRNA | upstream | 17063 | 13350198 ~ 13350433 (+) | True | G44884 |
| TU66458 | lncRNA | upstream | 20349 | 13346880 ~ 13347147 (+) | True | G44881 |
| TU66456 | lncRNA | upstream | 21552 | 13345264 ~ 13345944 (+) | True | G44879 |
| TU66472 | lncRNA | downstream | 8371 | 13399022 ~ 13399548 (+) | True | G44890 |
| TU66480 | lncRNA | downstream | 26108 | 13416759 ~ 13416972 (+) | True | G44898 |
| TU66481 | lncRNA | downstream | 26907 | 13417558 ~ 13417840 (+) | True | G44899 |
| XR_006251135.1 | lncRNA | downstream | 199234 | 13589885 ~ 13594537 (+) | True | LOC122346508 |
| TU66580 | lncRNA | downstream | 199335 | 13589986 ~ 13594601 (+) | False | LOC122346508 |
| XM_043242168.1 | mRNA | upstream | 33922 | 13314057 ~ 13333574 (+) | True | tprg1 |
| XM_043241840.1 | mRNA | upstream | 88316 | 13119195 ~ 13279180 (+) | True | LOC122346939 |
| XM_043241841.1 | mRNA | upstream | 88316 | 13127515 ~ 13279180 (+) | False | LOC122346939 |
| XM_043241811.1 | mRNA | upstream | 285377 | 13080565 ~ 13082119 (+) | True | smx5 |
| XM_043241810.1 | mRNA | upstream | 287450 | 13065838 ~ 13080046 (+) | True | inpp5d |
| XM_043242547.1 | mRNA | downstream | 78753 | 13469404 ~ 13471933 (+) | True | LOC122347353 |
| XM_043242548.1 | mRNA | downstream | 78753 | 13469404 ~ 13471933 (+) | False | LOC122347353 |
| XM_043242778.1 | mRNA | downstream | 145860 | 13536511 ~ 13542567 (+) | True | rpl5b |
| XM_043241553.1 | mRNA | downstream | 207888 | 13598539 ~ 13607514 (+) | True | atp1b1a |
| XM_043241549.1 | mRNA | downstream | 248343 | 13638994 ~ 13644273 (+) | True | zgc:172121 |
| TU66125 | other | upstream | 258130 | 13108735 ~ 13109366 (+) | True | G44645 |
| TU66063 | other | upstream | 285377 | 13080610 ~ 13082119 (+) | False | smx5 |
| TU66085 | other | upstream | 586576 | 12766183 ~ 12780920 (+) | False | crocc2 |
| TU65993 | other | upstream | 1275041 | 12087399 ~ 12092455 (+) | False | G44588 |
| XR_006251144.1 | other | upstream | 1357387 | 12002148 ~ 12010109 (+) | False | LOC122346564 |
| TU66465 | other | downstream | 3578 | 13394229 ~ 13409912 (+) | True | G44887 |
| XR_006251224.1 | other | downstream | 581522 | 13972173 ~ 13979005 (+) | False | meltf |
| unassigned_transcript_1264 | other | downstream | 690282 | 14080933 ~ 14081004 (+) | True | trnag-ucc_2 |
| TU67192 | other | downstream | 1845560 | 15236211 ~ 15238200 (+) | False | pomgnt1 |
| TU67233 | other | downstream | 1968210 | 15358861 ~ 15459386 (+) | True | G45419 |
