RNA id: XM_043241156.1


Basic Information

Item Value
RNA id XM_043241156.1
length 2924
RNA type mRNA
GC content 0.46
exon number 12
gene id tp63
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13350521 ~ 13390651 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTATAGAGACTTTAAGCCTGTCCCGTTCACTTCTGTAGCCCGCATAACACTTTTAGGggataaaagaagaaaaacaagggGTTAGAATCCTGGAGCCTGTGGAGCAAACAGCGGCTGCACTGCTCAACCTCAGCGCCAATATGTTGTACCTGGAGACCAATCCTCCCACATCATACAGTGAGCCACAGTATACAAGCCTGGGGCTTCTCAACAGCATGGATCAAAATGGTGGCTCCACCTCCACCAGCCCCTACAACAACGAGCATGCTCAGAACAACGTAACGGCACCATCACCCTATGCCCAGCCCAGTTCCACCTTCGAGGCCCTTTCTCCATCACCTGCCATCCCATCCAATACAGACTATGCTGGCCCACACACCTTTGACGTGTCCTTTCAACAGTCCAGCACAGCCAAGTCCGCAACCTGGACGTACTCCACAGAACTGAAGAAGCTGTACTGTCAGATTGCCAAAACATGTCCCATTCAAATCAAGGTCCTCACCAACCCACCCCAGGGTGCAGTTATACGGGCCATGCCTGTCTATAAGAAAGCAGAGCATGTTACCGAGGTGGTCAAACGCTGCCCGAACCATGAACTGAGCAGAGAGTTCAATGACGgTCAAATAGCCCCACCCAGTCACCTGATCAGGGTTGAGGGAAACAGTCATGCTCAGTACGTGGAGGATTCCATTACTGGGCGTCAGAGTGTGCTGGTGCCTTACGAGCCCCCTCAGGTGGGCACAGAGTTCACAACCATCCTGTACAATTTCATGTGTAACTCCAGCTGCGTCGGCGGAATGAACAGACGCCCTATCCTCATAATCGTCACTTTGGAAACCAGAGATGGTCAGGTTTTGGGTCGACGGTGTTTCGAGGCTCGTATCTGTGCGTGTCCGGGACGCGACCGCAAAGCCGATGAGGACAGCATCCGTAAACAGCACGTCAGCGATGGCACAAAGAGCAGTGAGGGTACGAAACGCCCTTTCCGTCAGGCCTCTCACCTCTCTCAGCTAAACTCCATCAAGAAGCGAAGATCCACCGATGAGGAAGTGTTTTGTCTGCCTATTAAAGGGCGTGAAATCTATGAGATTTTGGTGAAAATCAAAGAGTCTTTGGAACTCATGCAGTTCCTCCCTCAGCAGACTATTGAGTCAtacagacagcagcagcagaaccTACTGCAAAAACAGAGCTCTCTGCCACCCCAGCCTTCCTTTGGTTCCAGCTCACCCACCCTCGGCAAGAACAAACTGCCTTCAGTCAGTCAGCTCATCAACCCCCAGCAACGCAACACACTCACCCCATCCAGCATGGCTGGAGGACTAACTGACATGACCCCTCCCATGATGGGCGGCCCTGTCCCCATGAACACAGACATGAGTGCCTTGAGCCCCACCAACCCCCTGCAGCCTCAGTTACAAATGGTGCCCTCTCACTGCACGCCTCCACCACCCTACCCCATGGACAACAGCATTTCCAGTTTCCTGTTGAGGCTGGGCTGCTCGGCCTGTTTGGACTATTTCACAGCCCAAGGACTGACCAATATCTACCAGATTGAGAACTACAACTTAGAGGACTTGTCCAGGCTGAAGATTCCCACAGAATTCCAGCACATCATCTGGAAAGGAATCATGGAGTACCGGCAGACCATGGAGTTTTCTCCACCTCCCCACATCTTGCGCACCTCTAGCGGGACGTCCACCGTCAGCGTGGGCTCCACCGAAGCCAGAGGCGAGCGTGTGATCGATGCCGTGCGTTTCACTCTTCGTCAGACCATTTCATTTCCTCCGCGAGACGACTGGACCGATTTCTCTTTTGACCTGGCACCAGATTCTCGCCGCAACAAGCAACAGCGTATCAAGGAGGAGGGAGAATGAACGTAGTGCATCACAGTTCACTATAATACATGTGCATAGAATGTCAACAGTGCACAtttactgtatacacacacacacactcacgcgctGTTTTATATTAACACACTTGGTGTTGGTCCAGATCGTTTCACAGTTTTCCTCTGCAagtgatgattaaaaaaaaactgtgagcCTCATAGTCTAGTTCACTTAAACTTAAATGGGCAgataaaatgcacttaaagtCCTTTATGGTTTCATTTTTCTTCTGGTGGATTTAGCTCTGGTTGTCATTTCAGACCCctttattaaacacaaacagctGTAGCTGAGGGGAAATGGTGCTTTgctaaattgacatttttacgATTTCTTGAGACAAAGCACTTAAGAAATGCTAACATATTGTTACTACTTGCAAAATACACACTGAACTTTTAgggtttcctttttttttttttacgtggcCAAAggtatatttctgttttttttttgttttggtataaaaaaaacttcctcCCAGCCGGAGCTTTAGTGTTAATTCTATTCTTTGTTGTGATGATCATTCCTTGCGGTTGAACAAtgtctttgtcttttgttttacatgttgACATTTGTCAGCTTTGATTGTATGTACTTCAAATCGCACATGgttcttttctttattcttcACAGAAAGTGTTATTCATCCAGGGTGTAAGACTGATGTTGTCATGTAGCTTTTATGTACTGCTGTAAACCCTTCTTTGCGAGCTGCAAGTACTTTAATACTATTGCATTGCAGCGTGTAAGTATTGAATTGCTGACAGTTGTGGTAATGCATAGAAATGCTGTTGACCTGTAAAAGTAAGCGTGACTTACATTGCTAATGTAATGTGgcttcagtatttttttaaaacaaatttccaCTTCACTTGATACTTGTTAGCCTGTTGTGGCAAATTGTACAGATTTTTATTACGCTTTCATGCCAACGGAGTAGACAATTCTTTATCAaacttattgtaaatattttgcaatgtacttattttgatataaacaataaaacagatatCATGTAACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66463 lncRNA upstream 9508 13357403 ~ 13357988 (+) True G44886
TU66462 lncRNA upstream 10872 13356269 ~ 13356624 (+) True G44885
TU66461 lncRNA upstream 17063 13350198 ~ 13350433 (+) True G44884
TU66458 lncRNA upstream 20349 13346880 ~ 13347147 (+) True G44881
TU66456 lncRNA upstream 21552 13345264 ~ 13345944 (+) True G44879
TU66472 lncRNA downstream 8371 13399022 ~ 13399548 (+) True G44890
TU66480 lncRNA downstream 26108 13416759 ~ 13416972 (+) True G44898
TU66481 lncRNA downstream 26907 13417558 ~ 13417840 (+) True G44899
XR_006251135.1 lncRNA downstream 199234 13589885 ~ 13594537 (+) True LOC122346508
TU66580 lncRNA downstream 199335 13589986 ~ 13594601 (+) False LOC122346508
XM_043242168.1 mRNA upstream 33922 13314057 ~ 13333574 (+) True tprg1
XM_043241840.1 mRNA upstream 88316 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA upstream 88316 13127515 ~ 13279180 (+) False LOC122346939
XM_043241811.1 mRNA upstream 285377 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 287450 13065838 ~ 13080046 (+) True inpp5d
XM_043242547.1 mRNA downstream 78753 13469404 ~ 13471933 (+) True LOC122347353
XM_043242548.1 mRNA downstream 78753 13469404 ~ 13471933 (+) False LOC122347353
XM_043242778.1 mRNA downstream 145860 13536511 ~ 13542567 (+) True rpl5b
XM_043241553.1 mRNA downstream 207888 13598539 ~ 13607514 (+) True atp1b1a
XM_043241549.1 mRNA downstream 248343 13638994 ~ 13644273 (+) True zgc:172121
TU66125 other upstream 258130 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 285377 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 586576 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1275041 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1357387 12002148 ~ 12010109 (+) False LOC122346564
TU66465 other downstream 3578 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 581522 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 690282 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1845560 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1968210 15358861 ~ 15459386 (+) True G45419

Expression Profile