RNA id: XM_043241204.1


Basic Information

Item Value
RNA id XM_043241204.1
length 1744
RNA type mRNA
GC content 0.46
exon number 1
gene id cldn33b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14126574 ~ 14128317 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGGGCCTAAAATTTGAGTGCCCTCTCTCCCCATGTGCACATTTCCTTTACCTCTTATGCTCAGATGATGAGTGCCTCTTACTGAATACCGACGGGCTGTGAAGAACCTGCAGAAGTCTACAGTATCTGGATCCAAGGAGCTACCTCTGTtcttctcgctctctcttccATTCCTCCGTCATTCCTTCTCATCGAGAGGAGGTTCTTGAGGTGCCAACCAAACCCGAGGGCCGTCGGATCCCGAGAGAGGTGACCATGCCAAACCCATGCACTGTGTTCCTGGAAATACTTGGGGTGCTGATCGGGACGGGCGGCTGGTTTTGTTCGTTGGCGAGCACCATCATGCCTCAGTGGCTGTCACTTTCCACTGAGCTAATGGGCATGGAGAGCTACGAACAAGGGCTTTGGGAGGCTTGCGTGTTTCAGGAGGTCGCTGGTACGGAGTGTCGCCCCTACGATACCATCCTAGGCCTCGAACCCAAGCTCATGCTGGCCCGCGTTCTGATGTGCGTTTCGGATGCCACATGTCTTCTCGGACTTCTCCTCGCCATCCCCGCCATGAGTCAGATCAACTGCTGCAAGAGCGAGGAGGGACACAGGACCAAGCGAGGTTTGAAGATCACGGCCGGCGTGCTTTTATGCATCGCCGGGGTGTTCGTGCTGTTTCCCGTCTCTTACGTCGCTCACGATATTGTTATCAAGTTCTTCGACGAGACCGTACCTCACGTGGTGCCGCGTTCAGAGTTTGGAGACGCGCTGTTCATCGGCTGGGCTGCAGGACTTCTTGACATCGTGGCAGCCGTGATGTTGTTCGCCTCATGCTCCGACTCGAGAGACAGAGAACCACATTACCGTCAAAGGCAGGAGATCAGAACTATCGATGGTTCGAGAAAACGCACCGAGTACGTTTGAGGTACAATGCCTATTGATGAAGcaggacaaaaacatttttggataaTAGTTTCTTGAAAATGTTTATACTTAGATTCAGTGTATCCATCGATCAAACTCTTGAAACAGGTAAAGCATTATTAAGATGCATTATTAAGAGTAGCCTATTtgtattaatgtgttaatattGAAAAGTTGGCAATAAGTTTGCAGTTGCTTTTATAGAGATGTAGCGATtgacaacagttttttttttgccattttgtggAATTTTGATCATTCATTAAGATATTGTGTGcttaatacatatataactaGTACAGAAAAGGTAAGATTTTGGTCTTCTTCATTTGGTGCGCTGTACATTTAGTACTCAATGCCACCTGCAAAAGTACTTCTCGACAGGAAGGATGTATCCTGGCAAGTCTCCATATCTTGGCCGGCACGTCATGAGGCCACAAGTGTTTTTAGAGAGGAAGGcatgatgttttcttttcttttcttgcaaATGTATCACATGATGCTAAACTATGCATAGTGTTAATCACTGGAAGAGCACGTATGGATGTCATTGCACGTACTGCATTTATAGAAAGTCAGGTAAGATTTTAACATGAAGTGTTCTTCAAACCGTAGTTGTAATAAGTGTGTTATACTAGCGACTGTAAAAACTGAAGCCTCAGAAGGACTGGATGAGGAAGGATGCATTTCTTTCTAGAACGCAGCCTTTCCGTTTGAGACACAGCCATTGTTTGGGGATCGTTGTTTGTAAATAGCATCTGGAAATCAGCTGGTACTAATCCAGAATACTGTctgttttagtaaaaaaataaaaaagatgcttACCTGCa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66938 lncRNA downstream 144689 13981229 ~ 13981885 (-) True G45225
TU66908 lncRNA downstream 154480 13911684 ~ 13972094 (-) False G45206
TU66907 lncRNA downstream 154480 13953479 ~ 13972094 (-) False G45206
TU66905 lncRNA downstream 154480 13968313 ~ 13972094 (-) True G45206
TU66895 lncRNA downstream 265129 13861235 ~ 13861445 (-) True G45198
TU67006 lncRNA upstream 83049 14211366 ~ 14212986 (-) True G45270
TU67008 lncRNA upstream 86321 14214638 ~ 14216276 (-) True G45271
XR_006251154.1 lncRNA upstream 135472 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA upstream 135472 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA upstream 135550 14263867 ~ 14279026 (-) False LOC122346673
XM_043242271.1 mRNA downstream 86411 13986047 ~ 14040163 (-) True lrrc7
XM_043241824.1 mRNA downstream 340671 13722309 ~ 13785903 (-) False pex5la
XM_043241826.1 mRNA downstream 340673 13722309 ~ 13785901 (-) False pex5la
XM_043241825.1 mRNA downstream 340673 13722309 ~ 13785901 (-) False pex5la
XM_043241823.1 mRNA downstream 340673 13722309 ~ 13785901 (-) True pex5la
XM_043242836.1 mRNA upstream 51555 14179872 ~ 14190329 (-) True lurap1
XM_043242907.1 mRNA upstream 69375 14197692 ~ 14200743 (-) True ttc4
XM_043241459.1 mRNA upstream 157180 14285497 ~ 14402960 (-) True pde4ba
XM_043241460.1 mRNA upstream 157180 14285497 ~ 14363385 (-) False pde4ba
XM_043241461.1 mRNA upstream 157180 14285497 ~ 14335649 (-) False pde4ba
TU66636 other downstream 445300 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 658635 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 659009 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 659348 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 659517 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU66983 other upstream 32158 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1200650 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1475593 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1930651 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1931576 16059893 ~ 16060466 (-) True G45731

Expression Profile