RNA id: XM_043241210.1


Basic Information

Item Value
RNA id XM_043241210.1
length 5329
RNA type mRNA
GC content 0.48
exon number 18
gene id dnajc6
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14458989 ~ 14485480 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGATGACACACCGCCCTCCTCTCTCCTGCAGCTAGCGGCCGTATGTAGCGGGACATCATTCCCTCCCTCCGAGCCGTCCCGCACAACATGTGCATTCCCCTAGTCTCTTGAAATCGTCGTTGTCGTACGTCTATGTGATTCCCAGTTGTGCTCATGAGCCTGCTAGGTGGCTACAAGAAAAAGAGCAGTTACGATGGCTACGAATCTTTGCAGCTGGTCGATAGCAGCGGAGACTTCTGCACCGGGGGACGaagcggcggcggcggcggcggttTGACGGCAGTGACCCTCGGCAGCGTTAAAACAGGCCCCGCGCGGCAGGACGACTACAGCACCATGGACAGCTCAGGCCCTCCGTCTCCAGATATGGATGGAAACTATGGAGGGGGACTTCTGGATATGGTTAAAGGAGGTGCTGGAAAGTTCTTCAGCAACATCAAGGACAACCTGAAGGACACCATCAAAGACACCTCTACCAAGGTTATGAACCAAGTGGCTACGTATACAAAAGGAGAGTTGGACATTGCTTACATCACCTCGCGTATTATCGTGATGTCATATCCTGCTGAGGCGGTGGAGATGGGCTACAGGAACCACACAGAGGATATCCGTTCCTTTCTGGACTCACGGCATGCCGACCATTACACTGTTTTCAACCTGTCACAGAGGAACTATCGGGGGGCCAAGTTCTCAAACAGAGTTTCTGAATGCAACTGGCCTTCCAGGCAGGCCCCGAGTCTTCACAACCTGTTTGCTGTGTGTAAGAATATGTACAACTGGCTCAAGCAGAACCCCAAGAATGTGTGCGTGATCACCTGTTCGGATGGCAGAGCTCCTTCAGGCGTGCTGGTCTGTGCCATGTTCTGTTTCTGCCACCTTTTCGCCAACCCGGTGCCAGCCATGCAGCTTCTCAGCGCCAAGAGACCTGGATCTGGCCTGTGGCCCTCCCATAGGAGgtacATAGGTTACGTGTGCAGTTTAGTCTCAGAGAAGCCAACCATACCACACTCCAAACCACTAGTCATTAAATCCGTCACTATGAGTCCTGTCCCTTGCTTCAACAAACAGCGCAGTGGCTGTCGGCCATTTTGTGACGTGCTTATTGGCGAGACAAAGATATTTTCTACAGCTCAGGAGTACGAGAGAATGAGGGAACACAGGGTTCAGGAGGGCAAAGTGGTATTTCCTGTGAGTGTGAGCGCCCAAGGAGATGTGGTGATCTCAGTCTATCACATGCGTTCACATGCACTGCAAGCCAAGGTAACAAATACCCAGATATTCCAAATTCAGTTCCACACTGGTTTCATCGCTCCTGGCACCACAGTCTTAAAGTTCATGAaGACAGAACTGGATGCCTGTGATTCTCCAGAGAAATACCCACAGCTGTTTCATGTGCTGTTGGACATTGAGGTTGAAAGtacagagaaacagaaagatctCACGCCACCGTGGGAGCAGTTCCCCACCAAAGACCTGAGCCCCAACGTGCTTTTCTCCTGTCATCAAGAACACCAGGATGCACTTGCTGTTGCAgATCCTGCCCAGGGACACGGGAGTTGCGGAGGCAGAGTGGGACCAAACGAGGAGAGCGAACCGTCAGATGATGAAATGCTCTCCCTTTCTAGTCAGCAGAGCAACACCAGTAATGAGAAATCAAAAGCAGCTAAGAAAGCAGAGCCCCAGCCCGCAGTGGCCCCTCCTCCAGCAGCTGAGGAAGTCGATCTGCTGGGCCTGGATGGAGTTGCCGCTACGCTTCCTCCTTCCTCCCCACAACCTCCAACCACCAGCACCACCACGGACCTGCTGGGGGACCTGTTTGGAGCTCCTCCCACACCACAGCCGGCCAGCGGCCCTGCCTCCGCCCAGTCCACCCCGAGGAGATCCGCAGCCTCCTCCTCACCCTGTCCATCACCTCGGTCTGGAGACACTTTTGACCCATTTGGGTCTGGGCCCGCTCCCACCCCTAAGCCGCAGGACTTCATGGGGGCTTTCCTGGGTCCAGGTCGCAGTTCACCTGTGCCGCCCACTACTCCCACTGTCAACATCCAGCAGCAGAGCTCTACAGGAGCCTGGGAATGGAACAAGCCAGCACCTGCAGGTGCAGGTTTTGGGATGGGAAGTAAGTCTGCGAGCACTAGCCCGACCAGCTCAGTTCATGGTACTCCCACCCACCAGGCCAAACCCAACACGCTGGACCCGTTCGCTGATCTGGGTAACCTAGGAGGagGTGGTTCGGGTTTCTCCAGCAAACCCACCACACCTACTGGTACTGGAGGACCATTTCCACCCATGGGCTCCCCCAAGCGTCCGGCCCCCTCTCCCCAGCACACTGCCTCTGGAGGCTGGCATCCCAGCACAGGCTTCCCCTCGTGGCAGCCTGGAGGTGGGGCTCAGTGGCAGGCGCAGGCCCAGGGTGCACAGCACCAGACCCCACCTAAAGCACCAGGACCCTCTATGCCTCACACGTCACCACAGAACAGACCCAACTACAATGTCAGCTTCTCCAGCATGGGTGGAGCTTCGccaggagccactggggcaaaAGCACAGCCTAACATGGgAACCAGACCGAAGGTTTCGGACGCTAACTTTGATGACCTACTCTCCGGCCAGGGTTTTGCTGGCACTAAGGAGAAGAAGGGGCCAAAAACCATAGCAGAAATGAGAAAAGAGGAGATGGCAAAAGAAATGGACCCAGAGAAACTCaagATCCTGGACTGGATTGAGGGGAAGGAGAGGAACATCAGAGCGTTGCTGTCCACCATGCACACGGTGCTTTGGGAGGGAGAAACTCGCTGGAAACCTGTAGGCATGGCTGACCTTGTCACACCAGAGCAGGTGAAGAAGGTCTACCGCAAAGCTGTGTTGGTAGTGCACCCTGACAAGGCTACCGGACAGCCCTACGAACAATATGCCAAGATGATTTTTATGGAACTAAACGATGCCTGGTCAGAATTTGAAAGCCAAGGACAGAAAGCACTGTACTAAGACTTACTGTAAATGATCACAACCAGTCAGCAGTTTCCTGCCCCGATTAGACACCCTGCAACCCACCAGTCTTTGAAACACTCCTTTGTTAACCCTCCCACCTCCAGGACCCCGCTTCATAGAGACTTCAGAGCTTACATCTACAGTATAGTTGTGTGTATCTATCGATCCATGTACCAGGTCCCGTCATGCACTAGGCCAACATAACTGCTGTACGAGAAGACTGCTGTTGGGATAAAGTAGCATtcagctttgttttttaaaactcttaatTTGTGTCTTTCCCAGGACTCATTTAACGTCATCAAAGATCGGACTTTATCGTCAAACACCTGTGAGATATTTCAGTGAACATTATCAGTCAACCAGACCACCGTAGAATGTCTGGTAGAATTTATTCAGGAGCTTTCGGGTgagttttgatttattaaaaaggttCAGTGCTGGGGAAAAACATCtttagcaaatgaaaaaaatgaatttaagtgGCTTGcaaaactttattaaataactCAATGTATAAGTTCTGCGGCTGTTATTTAATAAGGTTTTGCATGCTGTGGCAGCATTCGGGAATCGAGACCTTATCTATTTCTTCCATTGTATTTCCTCTGTCCTGCGCACATGCTCAAAAACACTCATATTTGTGCGAggggtatttatttatttgttggctTTGCAAGGCAACAatgaaatgtgtgaaaataaaagtgGTATAGCAAGCTACGACTCTGTTTTAGTTCGGTCAGGGGCTAGAGGTTTAGAAAGACGGGCACAAATGAAAGAGCACTCCAGCAAAAACCTCCAGCCGCTAAAAATGTCTAATATCATGTAACACGGTTATCTTCTGAAATAAGTTACAACGCAGTACTGTGGGGCAGAAGCACAATAAGTAAAAGACTGTACAGGAAATGGGAGGTTTTCTCAAACTTGATCTGTGAAATGCAGTAGATTTAACTagcagtttgtttttatgttgttttctaCTGAATATTTGatctgtatgtatatgttgCACTATAATAACATACTGtttacaacataaaaaatcCAAGgaaattgtttattcatgttattatTCCATAGAAGAAAAGAAACGCTTTTCAGGTAAATCTGTCATGGCGTGTTTTGAGGCGAAAGTTAAGGTTGTCTTTATAGCGCCCTAAAGAACTAGTCACGCTTTCCTAGGAGATATTCACACAGAACTCGTTTTTACTACTTAAGACACGGCCAGTGGGACGGAGAAAAATTAGActgacttattatttttttaaaaagcttaacGTATATCGAGTGCCGCATTTTTACAACGGCGTCTTACACAAAACGCAAAATGTGAGCGAGGCACTTAAACGAGTCGATTTAGCGTGCATTtacgttaaaaaaataattaaaagatatGCATTGGAATGGAAAAACGCGTTCTGTGTCAAGACTCCTTCGCTTGATTAAAGTTTGGTTGTGAATAACATTCTTACGCGTTCATGCTTGCTACTAAAACAAAGCCTTTTGACTGAGGAATGTGATCGATGGGTAGCGTTCAAATCACGTTTTCTTTCATTACCGTAGGTGTCTTTAAAACCAACTGAACATATCATTCGAAACGGACCGTACATTTTTTTGACATGAAATCGCCGTTAACAGACATGAGTGGATCCAGCTCTTTCTGTCGGTATCCTCATAATGTACTGCATGTTTGACTGTAAGTGGCACGTGGTCCAAAGGAAGTTTCTAGAGCGTACAGCCACTAACCTGCCCTTTCTCTTCTCAGTATATTTGCACTTGAATGGCATTAGGTAAATCCAGAACACACTTGTGTCGTAACTTGCAGTACTTGCCGTACATCTTGTTCATGCTTTGCCTTCCTCTTTTCGCGATCACGCGGTAAACTACTGAAGCTTTAACTGTATCAAAGCGGTCTTCTCTACTTTCTCGCCGGCATCTTCCTTTTTGACACGACGCGATGCTAAAGACTTGAATGCTAACCATGGACAAAGACAACAGATTAGCGAGACCCGAGTAAAAGAAAGGAGCCCTGTATACAGGTTGGAACTTTTCCAAACTCTCCCTATTGTGGACTGAGCCGTTTATCTTCAATCTTAGGATATCATTATGTTCGGAAGCTAACCTCTGTATACAGTAGTGAATGTGTGGTGTTCAATAATGCTGTTCTCTGTAAGGAAATGGTAAGGTTTGGATACAgctatgtgtttgtttgctgtatCAGTATTATTGTgacattcatttgttttctgtgtcttttttttctgtttctgttctcCATATGGAGCTGTACATATTATAATGTGCATCGCACAAATAAATgggaaatatgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251154.1 lncRNA downstream 179960 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA downstream 179960 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA downstream 179963 14263867 ~ 14279026 (-) False LOC122346673
TU67012 lncRNA downstream 179963 14263867 ~ 14279026 (-) False LOC122346673
TU67013 lncRNA downstream 179963 14263867 ~ 14279026 (-) False LOC122346673
TU67022 lncRNA upstream 12455 14493121 ~ 14494022 (-) True G45277
XR_006251130.1 lncRNA upstream 171050 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA upstream 171050 14651716 ~ 14656031 (-) True LOC122346442
TU67118 lncRNA upstream 424836 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 622024 15102690 ~ 15154616 (-) True G45532
XM_043242424.1 mRNA downstream 8717 14414809 ~ 14450272 (-) True lepr
XM_043242425.1 mRNA downstream 8778 14414809 ~ 14450211 (-) False lepr
XM_043242423.1 mRNA downstream 26723 14414809 ~ 14432266 (-) False lepr
XM_043242422.1 mRNA downstream 26723 14414809 ~ 14432266 (-) False lepr
XM_043241460.1 mRNA downstream 95604 14285497 ~ 14363385 (-) False pde4ba
XM_043241216.1 mRNA upstream 4940 14485606 ~ 14492466 (-) True ak4
XM_043241214.1 mRNA upstream 4940 14485606 ~ 14491790 (-) False ak4
XM_043241217.1 mRNA upstream 4940 14485606 ~ 14490166 (-) False ak4
XM_043240967.1 mRNA upstream 43016 14523682 ~ 14583001 (-) False raver2
XM_043240966.1 mRNA upstream 43016 14523682 ~ 14582997 (-) True raver2
TU66983 other downstream 265823 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 777715 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 991050 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 991424 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 991763 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 848301 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1123244 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1578302 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1579227 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1880534 16361200 ~ 16364020 (-) False fam183a

Expression Profile