RNA id: XM_043241217.1


Basic Information

Item Value
RNA id XM_043241217.1
length 2067
RNA type mRNA
GC content 0.40
exon number 5
gene id ak4
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14485606 ~ 14492466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCTCGTTAGCCCCGGATTCCTACAAACGCTAGATAGGCATCTCGCTAGGGTTTAAAACACAGCCACTGCAAAACAAGGGTTTCGATGATCATATGAAGGGACGCGACCACCGTTTTGGCTTGTGTGTTAATATTAGGGGTTAATATTATCGATTCTTTATCTTCAATATCTGGTCTTCCGAGTGATGTTAGTATAACCCCGGGCGTGTGATGTGCGAGTTCATGTGAGGTGAATGCCTTAAAAAGTTGCCATGCTGGCAGGATGCCACTccacatttctgttttattggaCTGTTGCTATGCTCACCTCCCTTATTAAGACTTCAGCTGGCATCCATACATCTAGATAAAGACGGAGGAAATGCAGTGCTAATCAACATAATGTGTAGCCTTACATAGAGTACATTTATTCACGCTCGGTAAAGTTATCGTGGTAGGTAGATCCTTTTAGTTTAAAGCCTCAGGTCGGAAAGAATATagctttaaaaaggaaaatcgTGATTTAGAGGCTGGTGTTCAAGCTAAAACGTATATAAAAAAAGGACTGCTTGTACCAGACCATGTCATGACACGACTTCTGCTGCCTAGATTGGAGGAGATGACCAAATACAGCTGGTTGTTGGATGGTTTTCCTCGAACACTAGCTCAGGCTGAAGCCCTGAACAGTGCCTGTGATCTGGACGTGGCCATCAATCTCAACATTCCTCTGGAAACACTGAAGGAAAGGCTGCGACACCGATGGATACATCCCCCCAGCGGCAGAGTCTACAACATGTGCTTCAATCCTCCCCGTGTCCAGGGGATAGATGACATCACGGGAGAGCCATTAATTCAACAGGAGGATGACAGACCAGAAGCCTTGGTGGCCAGACTGAGACACTACAAAGATGTCGCAAAACCTGTCATAGACTTTTATAAGGCTAAAGGCATCCTATACACATTCTCGGACACAGAGACAGACCGGATCTGGCCGAATATCAGCGCACTTCTCAGCACAAAGATCCCCAGCATCCAGTCAGATGCTCGATGTGCTTCAACTCACTGAGGGAAAGACAACGGTGTGGCCTCGTCTCAGAGGAGGAAGAACTGACCGCACTTGGTTTCCAAAGACTccgtgcattttttttgttgcaactTGTCCAATGGTAGCGTAGTGTTATTCGTAGCGCTAGctttaattatttgtgttccTGAAGAGTTTTAATACAGTTGAAGGACTTGTTCTCTGCTTTTAGCATTTGCTGGAGTCTGGAAATCAGTCAGGGTAAAATTCAACTTATATCTAAGAAGTACAATACTTTATATCATCTCTGTCTGTGATGTTTGCCTTTCTTATCGATTTTATAGCAGTGCTACCATTCTTCTATGtaccataaaaatgtataattattttttatgtgctttacAAGCTCTGTAATCCAAATATGCCAGATATGCCTTGGAGAATTTCAATTTATTGAAAACCGGGCCTTATTCTTTGAAATGCATTGATAGaatgtttaactgttaaaatCAAACCAATATACGAGTAACGCTTTTAGCAAATGGCAGTGTATAagtataatgttataaaattatCCTATGTCTTACTGCCATCTTTCATAAATACTGTTCAGTATAGCAGTTTTAAGAGCCATATCTGGAAGAGCCGTTGATATAAAATAATCCGCTGGGGATAACTGTGACTGTTCAACCAGAACAACAGTGacgcttttgttttttgatcaAGAAGATTAAAACACAGACTTTATGAAAAACCACAGATTATATTACAATTAGATTAAAATTTGTCCCTGAAACATAGAGAAGCTCAAGGAGCGTTTTATAGGTGTCAGTCTGTGTCTGTATTTGTCTTTgtctatttttctttaattctttCTTGCTTCCTGTTCTCTCTCCAGTGTTCTGTTTCAGACTATGTCAGGTTTATATGCCTGATAAAAAACGGAATGGAGAGAACACTGAAAATATCTCCACACCTTCTCGTTGTGCAATACCATATACAAGAATCTACATGCTTGAGCTTTCCTCTTTttccaaagaaaataaacttattttcacagaaa

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004017 adenylate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251154.1 lncRNA downstream 206577 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA downstream 206577 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA downstream 206580 14263867 ~ 14279026 (-) False LOC122346673
TU67012 lncRNA downstream 206580 14263867 ~ 14279026 (-) False LOC122346673
TU67013 lncRNA downstream 206580 14263867 ~ 14279026 (-) False LOC122346673
TU67022 lncRNA upstream 2955 14493121 ~ 14494022 (-) True G45277
XR_006251130.1 lncRNA upstream 161550 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA upstream 161550 14651716 ~ 14656031 (-) True LOC122346442
TU67118 lncRNA upstream 415336 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 612524 15102690 ~ 15154616 (-) True G45532
XM_043241211.1 mRNA downstream 126 14458989 ~ 14485480 (-) True dnajc6
XM_043241210.1 mRNA downstream 4940 14458989 ~ 14480666 (-) False dnajc6
XM_043241208.1 mRNA downstream 4940 14458989 ~ 14480666 (-) False dnajc6
XM_043241209.1 mRNA downstream 4942 14458989 ~ 14480664 (-) False dnajc6
XM_043241213.1 mRNA downstream 5187 14458989 ~ 14480419 (-) False dnajc6
XM_043240967.1 mRNA upstream 33516 14523682 ~ 14583001 (-) False raver2
XM_043240966.1 mRNA upstream 33516 14523682 ~ 14582997 (-) True raver2
XM_043242887.1 mRNA upstream 97104 14587270 ~ 14642988 (-) True cachd1
XM_043242953.1 mRNA upstream 167718 14657884 ~ 14757952 (-) True ror1
XM_043242954.1 mRNA upstream 167718 14657884 ~ 14692231 (-) False ror1
TU66983 other downstream 292440 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 804332 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1017667 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1018041 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1018380 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 838801 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1113744 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1568802 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1569727 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1871034 16361200 ~ 16364020 (-) False fam183a

Expression Profile