RNA id: XM_043241236.1


Basic Information

Item Value
RNA id XM_043241236.1
length 2219
RNA type mRNA
GC content 0.49
exon number 3
gene id barhl2
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11254609 ~ 11258567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctgataCAAAGCGTTTGCGATGAATGAACGTTAAACTAGcgatacatttattaaacaaagttcggaattgaattaataaacacttttgaTGCCCTTAACGCGTCGAATTGCATTTTATCTGAAAGATGGGATGGTATCGCTGAGTAAACGATTGGTCGGTCGCTGGAGAATATTAGCGAACTGTAGCATACTTCTGTGATTATTTTGAGGAGTAATTTCCCGCCGTCGTTGTTGTTTGTTACTGTGTGGTAATTAGTTTTAGCATCGAGCGACGCGTGTAACGCGCCCAAAATgatgtaaagtgttaccgtaaaCGTATTTTGTCTAATGAAGACGCCGTCTGAGACGTTATAGCGGAGGGAAGGTTTCAAAAGAGCGTCGCGGAATCAATGAGCGCTTCTAAAGTGTAATGATGAAGTAAAAATCGCTGATTGGACGGACGCGTGACCCCGTAGCCAATGAGAGGAGAGATGGGGAGCACGAGGAGCGCGTTATAATAAAGGAGAAAATATGACGTCAATATAGGAAGTCATTGTAGAGCAACACTACAACGATTAGTGGCAAAAGGGAGCGTGATGTCGAGGAGTTAGAGCATCCCAATCTCTCCACACCTCAACTTTGAAAGAAAGTTCAATAACCATAACAAAAGGACGTGGACTACACAGACCCACTCGCTTTCCACGTTTCACCTTGAATGTAACAACATCTTGGAGCGCAGGctatgtttctgtttttctttgcgTAAGtgcaaggatttttttttgattcgcgcgtaatgtttgttttgtacttttcGGGGCTTTTTTAATCGTTCCGTCGGTCCGgttaagtttttttcttcttcttcctcttacAAAATTGCGCAGGAAAGTTGTTATGAAGACGACTTAAGTGCTCCTCTTTTTCTTGTACTATGGAAGGATCCAGTGGGTCTAGTTTCGGAATAGACACTATTTTGTCCACGACCAATTCTGGCAGCTCGGTACTGATGAACGGAGATTTTCGCCTCGGTGACGGTAACAGAACAGCGGATTTCAGGAGCCAGGCGACCCCGTCACCATGTTCGGAGATAGACACTGTGGGAACAGCCCCCTCGTCCCCGATCTCGGTTACGATGGAGCATCCCGAGCCGCATCTGGTCCAAGACAGCCTTCAgcatcaccatcaccatcatcatcacagTCAGGCTCAGAGTTTGCAGCTTTCACCCCAGCCTCATCCGCTCGGTCAGGCCGGCTGTGCCCCCAGGACTGCCACCTCCTCCTTTCTAATCAAAGACATTTTGGGCGACAGTAAACCGCTAGCAGCGTGCGCTCCTTACAGCACCAGCGTACCATCCCCGCACCACAGCCCCAAAACAGAGAGCGGAACCGCCCCGGACGGCATCAGGCCCAAACTAGAGCAAGATGAGAACAGAAGCAAACTGGACAAAAGAGATGACATGCAGAGCGATTTAAAATGTAACGGGGCGAAAGAAGAGGGCGATCGGGAAATTTCTAGCTCGAGAGACAGTCCGCCGGTCCGCTCGAAAAAACCTCGCAAAGCGCGGACGGCCTTCTCCGACCATCAGCTGAACCAGCTGGAGCGCAGCTTCGAAAGACAGAAATACCTCAGCGTTCAGGACCGAATGGACCTGGCAGCGGCCCTAAACCTCACAGACACACAAGTCAAAACTTGGTATCAAAACCGACGGACGAAATGGAAGAGGCAGACGGCTGTCGGATTAGAACTGCTGGCTGAAGCTGGAAATTATTCGGCCTTACAGAGAATGTTCCCATCTCCGTATTTCTATCACCCGAGTTTATTAGGCACCGTGGACAGCACGACAGCggccgccgccgccgctgccATGTACAGCAGCATGTACCGGACTCCGTCCACGCCGCATCCATCTCTCCAGAGACCGCTCGTCCCCAGAGTGCTCATTCACGGCTTGGGGCCCGGGGGACAACCGGCACTGAACCCGATAGCAAACCCAATACCGGGCACACCGCATCCCCGGTAAAACGAAAAGACGCGGAGAGACAAATGCATCACACGTGATGTGACAGACTGCGCTGAACTTTCACGAGAcgcattttttccccccctccGACGCCGAGAGACGATTTTATCGAAGAAAAaagatgtattatttaatatggaCCATTTCTGACGTATAGGCCAAACTAAACCAGACGAGCCTGTGACCGTGACAGTAAAAGGACTGTTCATTGTca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09360 BARHL; BarH-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65806 lncRNA upstream 6601 11247791 ~ 11248008 (+) True G44467
TU65804 lncRNA upstream 8615 11245685 ~ 11245994 (+) True G44465
TU65795 lncRNA upstream 12584 11241794 ~ 11242025 (+) True G44456
TU65794 lncRNA upstream 12922 11241120 ~ 11241687 (+) True G44455
TU65792 lncRNA upstream 16186 11238215 ~ 11238423 (+) True G44453
TU65838 lncRNA downstream 169278 11427845 ~ 11428830 (+) True G44483
TU65835 lncRNA downstream 169377 11427944 ~ 11428751 (+) False G44483
TU65831 lncRNA downstream 169557 11428124 ~ 11428708 (+) False G44483
TU65889 lncRNA downstream 382514 11641081 ~ 11643698 (+) True G44521
TU65890 lncRNA downstream 382514 11641081 ~ 11643698 (+) False G44521
XM_043242072.1 mRNA upstream 53685 11179828 ~ 11200924 (+) True znf644b
XM_043242069.1 mRNA upstream 53685 11179828 ~ 11200924 (+) False znf644b
XM_043242073.1 mRNA upstream 53685 11179828 ~ 11200924 (+) False znf644b
XM_043242070.1 mRNA upstream 53685 11179828 ~ 11200924 (+) False znf644b
XM_043242071.1 mRNA upstream 53685 11179828 ~ 11200924 (+) False znf644b
XM_043241804.1 mRNA downstream 183544 11442111 ~ 11447927 (+) False LOC122346915
XM_043241806.1 mRNA downstream 183584 11442151 ~ 11447927 (+) False LOC122346915
XM_043241805.1 mRNA downstream 183883 11442450 ~ 11447927 (+) False LOC122346915
XM_043241803.1 mRNA downstream 184320 11442887 ~ 11447927 (+) True LOC122346915
XM_043241802.1 mRNA downstream 184404 11442971 ~ 11447927 (+) False LOC122346915
TU65546 other upstream 381031 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1131175 10122753 ~ 10123434 (+) False atad5b
XR_006251197.1 other upstream 1329711 9916051 ~ 9924898 (+) False pecam1b
TU65822 other downstream 156706 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 156706 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 714404 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 743581 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 828832 12087399 ~ 12092455 (+) False G44588

Expression Profile