RNA id: XM_043241254.1


Basic Information

Item Value
RNA id XM_043241254.1
length 2244
RNA type mRNA
GC content 0.49
exon number 15
gene id dzip1l
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11791670 ~ 11801796 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAACGCTTCTCTCTTAGCCCCGCCCATCAGCAACAGTTACCAGCTGTTAACTTCTTCTTTCAGTTTGTAGCTTGAAGCTTTTAACTTATTACATTTgaggtttttaaatgtaaccaaATCAAAGCCTCTGTTTAGGAATCCCCGCATCCATTCACCTCTCTGTCTCAAACCCGTCACCATGCTGGGCCAGTTCTCGCCCGGCGAGGCCTACAGCGCCCCACAGCTGCTCCAGCCCTTCCGCTTCCGCTCACGAACCGAGCCCGTAGACTGGaggcgtctctctgccctcgACGTGGAACGCGTCGAAAGAGATATAGATGTTGATGTGCTTCAGGATTTCATCACGACCGTTACATTCTGCGCCGTGGAGGGCGAGAGATGCCCAAACTGCAGAGGACCTGCTGACCCTTCTTTGATCAAGCTGCTTCGCATGTCTCAGCTGAGCACCGAGTACCTGCTGCGCTGCCAGGACTTGCTGAGCTCTCAGGTGTCGGGGCTGGAGGAGCGTCTGCAGGCAGCACTCGATCTGGTTCAGAGAGGAGAAGAACAACGAGCAGAACTCCAAAAACATCTGCAAGAAGCCAAACAGGAGAACCGGCGGAGAAAAAAACTGATCGCCACTCAACAGCTCCTCCTGCAGGCCAGTGCTAATAATTATCACAAGTGCCAGTTCTGTGAAAAATCCTTTGTCAACTACTCTTACTTACAAGCACACGTTCAGCGGCGACATCCTGAAGTTACAGATGCAGAGAGACAAAAGAAGCGGAAAGTAGACGAGATGGAAGACGGCATAGAAGAGCTGAAGGAGAAACTGAGACTGACGCAGATGCAGCTACAggcagagaaagaaacagaaagtttGAAGCGTCTGCAGGAACAAGAGGAGCAGCGAAGGAGAGAACAATCGGAGAAGGAAGCACTGGAGAGATggaaagaagaggagagaagaaaGTCTCAGCAGGAAATTGGAGAGCTAAGACAGTTACTTCTCCAAGAGTCTAAAGACATGGCAAGCAAGAGCTCATCCATAGAGGCTAAACTGCAAGTGTTGCAGAACAAGGAGGTGGGTGCAgttaataatgtcattttacaAGAAGAAAGTGACCCTGAGAAAGAACtgagagaaaacagagagagagagctgaaagagaaaatggcCAGGAAGaaAAGTGAATGGAAGAACAAATTTCAGGAAGCACAGAAAAGACACCGACAGGAGAAAGAAGAGttgAAGAGTGAGAACACCAGGCTTGTGAAGGCCTTGTCTGTGGAGAAGAACTCTAGCTCCAGTCTGCAGAAACTTCAGCAGCAGgttgtctctctttcttctcagcTGAGCCAGAAGGACAGACTCATCAAATCTCAAAAGGAGAAGATTAAAAAGCTGTCAGTCTCAGCTCCAGTGGTTTTACAAGAAGCCCAAGATTTTCAAGAGGAACCagaagaggaagatgaagagaGCATGGAGGATTCAGATGAACCTCAGTGGAAGGTTCTAAAGTTACATAAAGGAAAGTCAGAGCTGATGAAAGCATCTAGACCCATTCTAGAAGAATCTCTGGAGGAAAAACTAGAGAATATGGGACTGCGGAAGGGTACCAAGGGTATCtctaaacaaacttttaagAGTCTGAGTGCTCTGTTGACTGGTCAGCAGCTGCAGAGATACAGACAGCAGCCAGACCTTCAGAACCAAAGAGACAACCTCGCACATGAGGTCATCAGGCGAGTTAAAAGCCTACAGAACAGCCAGGGGAAATTACCACCCAGCACTTTAAAACAGGGGGGAAAGAAAAAATCAACCCTAGTGAAGGAAAAAAGCCTTCGATCCAGGGAGGACTCAAAGTCATCCATTCAGAGGGCCAAGAGCCAGCAGCCACAAGCACTTATTCCAACACCTAACCCACGCTCCAGTGTACCTCATACtccaaaaacacagcaaaaaaagaatAGCACACCGCCTTTCAGTTCAGATGAGGATGAGTCAGTTGAGGACAGTGCCTATATCACCAGCTCAAGGGGCAAGCCTTCCCCCTCCTTGCGCCTCGTCCAATCAGGATCTCTGCTGAATCCAACAGCTGAGCCTGATTGGACAGACAGTGAATTGTCAGAGGCTCCTGACGCACGCAACCTTGCTGTCTGATGAGGAGAGTGACTTGGAGCTGTCCTCCATAGAAGAGCTCACGGCCAACCGTGCAAGAGCACACAAAGGTTCAGAGGTTGCCGGGACCTCAGGGACCA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251221.1 lncRNA upstream 85744 11689692 ~ 11705926 (+) True LOC122347449
TU65889 lncRNA upstream 147972 11641081 ~ 11643698 (+) True G44521
TU65890 lncRNA upstream 147972 11641081 ~ 11643698 (+) False G44521
TU65835 lncRNA upstream 362919 11427944 ~ 11428751 (+) False G44483
TU65951 lncRNA downstream 47660 11848412 ~ 12264787 (+) True G44568
TU65966 lncRNA downstream 136349 11937101 ~ 11976950 (+) True G44574
TU65960 lncRNA downstream 170829 11971581 ~ 11976950 (+) False G44574
TU65963 lncRNA downstream 176075 11976827 ~ 11977411 (+) False G44574
TU65972 lncRNA downstream 192806 11993558 ~ 11994137 (+) True G44575
XM_043241804.1 mRNA upstream 343743 11442111 ~ 11447927 (+) False LOC122346915
XM_043241284.1 mRNA downstream 201395 12002147 ~ 12009882 (+) False LOC122346564
XM_043241283.1 mRNA downstream 201395 12002147 ~ 12009880 (+) False LOC122346564
XM_043241282.1 mRNA downstream 201397 12002149 ~ 12010539 (+) True LOC122346564
XM_043241856.1 mRNA downstream 210343 12011095 ~ 12055010 (+) True farp2
XM_043241857.1 mRNA downstream 210343 12011095 ~ 12055010 (+) False farp2
TU65822 other upstream 371340 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 371340 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 918092 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1668236 10122753 ~ 10123434 (+) False atad5b
XR_006251196.1 other upstream 1868513 9916052 ~ 9923157 (+) False pecam1b
unassigned_transcript_1089 other downstream 172219 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 201396 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 286647 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 965431 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 1279858 13080610 ~ 13082119 (+) False smx5

Expression Profile