RNA id: XM_043241263.1


Basic Information

Item Value
RNA id XM_043241263.1
length 1411
RNA type mRNA
GC content 0.40
exon number 5
gene id rgs16
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16807611 ~ 16809797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCTGCTTCCTGCTCTATATAAACCCTCTCTTCCCTCACTGCAGACACACTGCTGATAAATTTCACCTAGAGATCACGCTGCGCAATGGATATTTATTTCCCTTCTGGCTTTCCAATGTGTAGAGGAATAACAGGGCTCTCAAACAATTGCCTAGAAAGGGCCAAAAGATTAAAGGCATGCGTGGGTGGATTTCTGCAGAGACAAGACTTGAGCAGCCTATGTAAATATAGAAAACCAAGGTTGACCTTGGAGGAATGTCTGATGTGGAAACAGTCTTTTGAGAAGCTTCTGTCCAGCAAACATGGACTGTATGCCTTCAGAGCTTTCCTGGTATCTGAGTTTAGTGAAGAAAACATTGCTTTCTACCTGGCCTGTGAGGACTACAAGAGCACAAAGTCTGCAGCTAAGATGCCATCCAAAGCCAAGAGGATCTACGAGGAGTTTATCGGAAGTGAAGCTCCAAGAGAGGTTAACATCGATTACGAGACTAGAGACATTACTCAAGCCAACTTGAAAAGCCCTACGGCATCCTGCTTCGATATGGCCCAGTACCGCATCTACATTCTCATGGAAAAGGACTGTTACCCACGATTCCTGCGCTCCGCTGCCTACCGGAATCTAGTCAACCAGCTCACAGTGAAGAGCGCTAAGGCAAGAAGCAAAAGGGCCATTGCCGCCAGACCACCAACTGAAGATGAAGAACCGAAATGAAAAACGTAGATGCATTTTGGTTCTGCAATAGGTGGAAGCTCGGGCAAGAAGTGGAAGGGACCGCTGCAGACCCTAAAAAGGCTGCTTGAGGTGGTCTTGAGTGCCATGAAGAGACGAAGAGAAGAGCATCACGGAATCAGATTGACTGCATTCCCAGATCCCCTTAATAGTGTCCATGAGAGGGAACGGAAGAGCTGCTGGCGAAGAGAGATGCATCTGCACAAACACCTGTAACTCAACACAAAGGAGATACAGACTTTACTGAAGCATGCATGAGCTTAAAAGCACATAGCATACTTTTGAAAACAATTTATGTGTTTTGTAAACTTTATACAATGAAGAAAAGTGTTtggatatttaatgcattaatttatttaatttatttaaatcctttttttatataaatcacCCCTTACAAATATGATGGTAAACAGGTGgtatcttatttaaaaaataaataaataaacaaaataatattattaaaatcgtCACGAAAAAGACAAACctttgattaattaattcaacCTTTTGAAATGGAATCTTTTTAAAGATATTGACAATCTGTCTGGACTGAGATATAAGGCTTAAGAATGTCGGTGTACtatgtattttattgatttttttatatatgtttttgttaactaaattttaaatgaaagtgaatcaattttttgcattaaagtgaTAATGTGCTttca

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 484806 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 536503 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 538219 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 540069 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 689025 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 377659 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 433883 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 603241 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 704841 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 997824 17807621 ~ 17808115 (-) True G45993
XM_043242107.1 mRNA downstream 11459 16788677 ~ 16796152 (-) True rgs5a
XM_043241906.1 mRNA downstream 43337 16687378 ~ 16764274 (-) True nos1apa
XM_043241907.1 mRNA downstream 124178 16676285 ~ 16683433 (-) True LOC122346973
XM_043242411.1 mRNA downstream 147878 16649465 ~ 16659733 (-) False uap1
XM_043240975.1 mRNA upstream 7581 16817378 ~ 16830261 (-) False rgs8
XM_043240971.1 mRNA upstream 88888 16898685 ~ 16926368 (-) False brinp3a.1
XM_043240970.1 mRNA upstream 88888 16898685 ~ 16926368 (-) True brinp3a.1
XM_043242413.1 mRNA upstream 408190 17217987 ~ 17224910 (-) True LOC122347243
XM_043242414.1 mRNA upstream 425993 17235790 ~ 17246386 (-) True LOC122347244
TU67772 other downstream 443591 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 747145 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 747844 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 1202141 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 1476794 15328967 ~ 15330817 (-) False LOC122347580
TU67937 other upstream 6843 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 376892 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 498018 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 933918 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 933918 17743715 ~ 17774107 (-) True opa1

Expression Profile