RNA id: XM_043241276.1



Basic Information


Item Value
RNA id XM_043241276.1
length 1154
RNA type mRNA
GC content 0.42
exon number 4
gene id dpt
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13578792 ~ 13585368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAGCCCAATTCCTGACCATAACCATCTGGTTATGGTGAAAATTATCACCCCTGGATCCGGACACAGAACATCTGGACAGCACATCCCAGAAAGCCTTTAAGACGAAGGAAGCATTGAGAAGTTTCACAGAGTTTGACTTCAGGATGAGCTCAGCACATGTTCTGCAGGCTCTGTGCCTGCTGATGGTTTTCTGCACAGCCAACGCTCAGAACGGCTACATGTATGATACCGGTGAGGAGTGGGTGAATACCTGGCGCCAAGGCTTCAACTTTCAGTGTCCCCATGGTGAAGTCTTAGTGGCGATCAGGAGTTACTTCAGTGAAAAGGAAGGCTCGGACCGCCTGTGGAACTTTGAATGCCAGAGGACTCCTTATGACTGGGGAGAGCCCAACGAATGCTGGTGGGACGATATCAACAGAGCCGGGCTGGAATGGTCCTCGGTTTGCACTAACAATGGGCTGGTTGCTGGAGTGCAAAGTAAGTATTTTGAAGCAGTTCTGGATCGAGAATGGCAATTCTACTGCTGTCGATATGCCCGCAGGTGCCCATATTCCTGCTGGAAGACGAATGATGTTCCCGAGTACCCCAGAGAAGAGGGAGAGATGGTAGTGCCCAGTTACGGCTACTTTATAAGGGGGGCTCAAACTACTTTCAGTGGTGTATTGAGGGATCGGCAGTGGAAGTATATCTTGTGCCGAATGACAGACTTTGATTGTCAGTTTGAAAACTTCTAGACTGCATTCCTCACTTCTATGCTAGAAAAGAGCACAATGCTCACCACCACATAAGCACTTATAATAGCACTCACTGAAAACATACGCCatactcatttttttattcGCTTCACAGCttagaaatatttgatttgctTTGTATAAGCCTGCATGGATTgctatgttttcatattttgcagtcatttctgttatttctatgtttacaaatattttgtaaccatttttaaaatataaatgacaaaaaaacattatttttcctttttttaattttttttttttacaaatttgattATGATCTCCAATGCATTCTTGAATGGTTGTTGAAAAAGTCCAAAATATTCCTATTTTTTAAGTCTCAAATATGGAGTAACGAAACATACCGAACTCTTTGGAAAATGGGCGGAACTAATAAAGCAAAGG

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 221271 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 224009 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 224612 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 225142 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 225723 13352462 ~ 13353069 (-) True G44938
TU66648 lncRNA upstream 107970 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 112131 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 132834 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 238304 13823672 ~ 13835591 (-) False LOC122347350
XR_006251213.1 lncRNA upstream 238304 13823672 ~ 13835591 (-) False LOC122347350
XM_043242247.1 mRNA downstream 8870 13562045 ~ 13569922 (-) True zbtb11
XM_043242776.1 mRNA downstream 17767 13543207 ~ 13561025 (-) False dipk1ab
XM_043242774.1 mRNA downstream 17794 13543207 ~ 13560998 (-) False dipk1ab
XM_043242775.1 mRNA downstream 17796 13543207 ~ 13560996 (-) True dipk1ab
XM_043242772.1 mRNA downstream 43352 13497947 ~ 13535440 (-) False evi5b
XM_043241546.1 mRNA upstream 22148 13607516 ~ 13638943 (-) False nme7
XM_043241545.1 mRNA upstream 22245 13607613 ~ 13638945 (-) True nme7
XM_043241544.1 mRNA upstream 69892 13655260 ~ 13681294 (-) False tmem131
XM_043241543.1 mRNA upstream 69892 13655260 ~ 13681294 (-) True tmem131
XM_043242700.1 mRNA upstream 105658 13691026 ~ 13692826 (-) True mrpl47
unassigned_transcript_1263 other downstream 110853 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 111227 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 111566 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 111735 13466986 ~ 13467057 (-) True trnaa-cgc_54
unassigned_transcript_1259 other downstream 111927 13466794 ~ 13466865 (-) True trnaa-cgc_53
TU66636 other upstream 83160 13668528 ~ 13681274 (-) False tmem131
TU66983 other upstream 575107 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1743599 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 2018542 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2473600 16058968 ~ 16059767 (-) True G45730

Expression Profile