RNA id: XM_043241282.1


Basic Information

Item Value
RNA id XM_043241282.1
length 2942
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC122346564
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12002147 ~ 12010539 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAAAGTTGAGACTGAATTCAACAGCTACAAGGTTTAGTATTGTGTGATGAGATTACATGGCAGTCCTGCTGTTAGGTAGAATCAGTATCAGTCGGTTAGTGTTGGCTGAGGATATCGGTTTACTGAGTTTGCTTCAAGATGTGgacatttcagatttaaaagcaGTGAATACAAACTGAGGCGTCCGAAGGCCATGCCAGGGCCAGATGGATGCAGAGAACTGTATCCATGCCAAAACTTTCCTGTGTCTAAAACTTACTCTCCCCCTGAACCTCCACTTAAGGGTGAGAAATGGCGCAGGGCGACAGACTTTATTTTGAGAAGAGATGTGCAAGAGAAGGACCATCAACGCCAGAACTCCACAGTGGCACAAAAACCACACCAAGGAGTTGCCACTCACAGTCTGGTCGCTCTCCCAAAGATAAAACCAATCCCAAAACCTTGTCTACCGAAAATGCTGTTCCATGTTGACCAATCGCAGCCTGTCCATAATGGCAATATAAATTATGTCACTTCTGCTTCAGATCCAGCTTGTTCAGATGGAAAGAGTAATGACACTCATTTGGAAAACTGGCGCAGTCGTCCAAAAACTATCTCCCAGAAATCAAAACGAGTCCCTCCGAGCATACCTGTACCTGCCAGACCTCTTCCCAAAGAGCCAGAGCAAATGATCTCCATGATGGGTTCTGAGGTTTGTCCCCCTGGCAAAGCCCTTCCACACCTATCTCTGTCAAAACCAATTCCTTCTTTCAGAGTCCACGATAAACCCAAACTCAAACACAACAAAGTTGAACTGATTAGCGACTTTGTCAGGGAAGGTTTGGTTTCTGAGCTTCACAAAAGATTCTCAGGAGCAATTAAAGAGAGAGATTGTAGCACCAACAAGccaaaagtatttatttgcttCCACACCAAAAGACTGACTGATGGAGAAAGACTACATGAAAATGTATCTATCTCAGGTGTTTCCAATGGAGATAGTCCAGAGGATGTTCCTTCTGTGATAAAATGCCAAGAAACTGATGGGGAGAATAACTCTAAGAACTTACTTGAAACTTCTCAAAGGGCTCTAACAATGCTGCCTCTTCCTGGTTTGGTggacaaattgatcaaaagcccTTCTCAGAGAGACTTCAACTGCATGTGTGCTGATAATAAGAGAAAGTTGGTAGAAAGCTTGTGGCAAGAACGGAGAGTTGTAAGAGATAGTGGAATACTACATCGGCTCAGTAAGGAACAGCTCAAGCTTCAAGAGCATCTGTATGAGGTCGTCACGTCTGAGCAGTCCTATCTTCAGGGCTTGGAGGTGGCTGTGGAGCATTTTCAGGAATCTTCAGTGCTGAAAGATGCTTTGGCACCAAGAGACAGAAAGTCATTGTTCTCTAGCATTGCTAAGATCAAAGAGATCAGTCAAAGCTTCATGGATGCAATGCTGTTGGAGCTGGCCTCAAGTGTGTTCTGCGACATAATCTGTGACGTTGTACACCAGTATGCTCTTGGACCCTTTGATGCTTATATAAATTACATCCGTAATATGCCCTATCAGGAGCAGACGTTACACAACCTCGGAAAAGAGAGTCCTCGGATTGTGGAGATCTTGCATAAACTACAGGAAGACCCTCGCTGCAGCCGCCTGCCCCTCAAATCTTTCCTTTCACTGCCATTTCAGAGAATCACACGGCTTAAAATCCTAATGGAGAACATCCAGAAGAAGGCCCTTCCAGGGTCAGACTGTGAGGCTTCATCATTGAGAGCTCTGACGGAGATCTCCAGGCTTCTAGAAGCTTGCAATTGGCAGGTGGGCAGAATGAAACAGATGGAAGAAATAGTGCAGATCGCTAACAAGATTGAGTTTGCATGCAAGgcCCTGCCTCTTGTTTCTTCTTCCCGCTGGCTTGTGAAGCAGGGAGATCTGGTGCAAATCTCTTTGAAGGAAAACATGTTTGGCCAGAGAAAACTGTGTCCAGTACTTCTGTTCCTCTTTAATGATCTGCTGCTAGTGGCAACCAGGAAAGGGTTGGATCGGTTTGTAGTTCATGACTACGTGCACCGCTCTCTGATAGAAGTGACCGAGGGCAAGGATctggaggaggagctggagggATACGAGCTCAACCGGACATTTAGGCTTGTTCTTTTGCATAACCACCGGAGCACCACCTCTCAACATCTACTGCAAACAAATTCAGAAACTGAGAAGGACTTGTGGGTGGAGCTCTTGAATGGGCGGAGACATGGACAGGATACTGTGTATGAAGAGTGGGACTGTCCTCAGGTGCGATGTATAGAGGGGTACAGCGGACAACAACAAGGGGAGCTTAGTCTACAGCTGGGAGATGTGATTAACGTCATGCAGAAGACTTCAGATGGGTTTCTGGAAGGCCGCAGGGTACAGGACGGACAGCGGGGCTGGTTCTCCACTGCATGTGTTGTGGAGATCACCAATGAACATGTGCAGAGACGTCATCTTCGTCAGCGGTATCATGTCCTACAGACAGCCACACGACTGCTGAAACAACGCAGCGGGGCTCTTGAACTTACAACCACAACATGCTTTAAATGAGAGACTGTCTACATTGCAATTTGCATTTTTTCACTTActgacttaaaataaattagtaaataattatatgtacAATCTATGTATAATTTAACTGAACTGCTGCCAGTTGGTCAGTTGATCTTTTGgtctttgtatatatatatattttttatgtgtctGGTTTTACAGAACAACTTCAAACATCTCTGCATGTGATTTAAGAAACACAGAAACTGCTTTCTATGGTTTGCGACAAATATTCTTGCTTCAGCTTCCAAATGTGGAGCtgctgtttcttttcttttttttttcttaatatatgtAGCCTAATGTATTGTGCAAGGTCATGCTTATTCCCTTCTGTCGTTTTCCGCTTCCgttctgtttaaataaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65972 lncRNA upstream 8012 11993558 ~ 11994137 (+) True G44575
TU65963 lncRNA upstream 24738 11976827 ~ 11977411 (+) False G44574
TU65966 lncRNA upstream 25199 11937101 ~ 11976950 (+) True G44574
TU65960 lncRNA upstream 25199 11971581 ~ 11976950 (+) False G44574
XR_006251221.1 lncRNA upstream 296223 11689692 ~ 11705926 (+) True LOC122347449
TU65995 lncRNA downstream 76860 12087399 ~ 12092455 (+) True G44588
TU66023 lncRNA downstream 143783 12154322 ~ 12155432 (+) False scly
TU66030 lncRNA downstream 147523 12158062 ~ 12159895 (+) False scly
TU66049 lncRNA downstream 466585 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 466585 12477124 ~ 12482182 (+) False G44604
XM_043241253.1 mRNA upstream 200353 11791670 ~ 11801796 (+) True dzip1l
XM_043241254.1 mRNA upstream 201397 11791670 ~ 11800752 (+) False dzip1l
XM_043241806.1 mRNA upstream 554222 11442151 ~ 11447927 (+) False LOC122346915
XM_043241856.1 mRNA downstream 556 12011095 ~ 12055010 (+) True farp2
XM_043241857.1 mRNA downstream 556 12011095 ~ 12055010 (+) False farp2
XM_043241858.1 mRNA downstream 556 12011095 ~ 12055010 (+) False farp2
XM_043241859.1 mRNA downstream 556 12011095 ~ 12051787 (+) False farp2
XM_043241355.1 mRNA downstream 54759 12065298 ~ 12074564 (+) True boka
unassigned_transcript_1089 other upstream 29105 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 581819 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 581819 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 1128571 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1878715 10122753 ~ 10123434 (+) False atad5b
TU65993 other downstream 76860 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 755644 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 1070071 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 1098196 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1383690 13394229 ~ 13409912 (+) True G44887

Expression Profile