RNA id: XM_043241284.1


Basic Information

Item Value
RNA id XM_043241284.1
length 2407
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC122346564
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12002147 ~ 12010539 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTTAAAGTTGAGACTGAATTCAACAGCTACAAGGTTTAGTATTGTGTGATGAGATTACATGGCAGTCCTGCTGTTAGGTAGAATCAGTATCAGTCGGTTAGTGTTGGCTGAGGATATCGGTTTACTGAGTTTGCTTCAAGATGTGgacatttcagatttaaaagcaGTGAATACAAACTGAGGCGTCCGAAGGCCATGCCAGGGCCAGATGGATGCAGAGAACTGTATCCATGCCAAAACTTTCCTGTGTCTAAAACTTACTCTCCCCCTGAACCTCCACTTAAGGGTGAGAAATGGCGCAGGGCGACAGACTTTATTTTGAGAAGAGATGTGCAAGAGAAGGACCATCAACGCCAGAACTCCACAGTGGCACAAAAACCACACCAAGGAGTTGCCACTCACAGTCTGGTCGCTCTCCCAAAGATAAAACCAATCCCAAAACCTTGTCTACCGAAAATGCTGTTCCATGTTGACCAATCGCAGCCTGTCCATAATGGCAATATAAATTATGTCACTTCTGCTTCAGATCCAGCTTGTTCAGATGGAAAGAGTAATGACACTCATTTGGAAAACTGGCGCAGTCGTCCAAAAACTATCTCCCAGAAATCAAAACGAGTCCCTCCGAGCATACCTGTACCTGCCAGACCTCTTCCCAAAGAGCCAGAGCAAATGATCTCCATGATGGGTTCTGAGGTTTGTCCCCCTGGCAAAGCCCTTCCACACCTATCTCTGTCAAAACCAATTCCTTCTTTCAGAGTCCACGATAAACCCAAACTCAAACACAACAAAGTTGAACTGATTAGCGACTTTGTCAGGGAAGGTTTGGTTTCTGAGCTTCACAAAAGATTCTCAGGAGCAATTAAAGAGAGAGATTGTAGCACCAACAAGccaaaagtatttatttgcttCCACACCAAAAGACTGACTGATGGAGAAAGACTACATGAAAATGTATCTATCTCAGGTGTTTCCAATGGAGATAGTCCAGAGGATGTTCCTTCTGTGATAAAATGCCAAGAAACTGATGGGGAGAATAACTCTAAGAACTTACTTGAAACTTCTCAAAGGGCTCTAACAATGCTGCCTCTTCCTGGTTTGGTggacaaattgatcaaaagcccTTCTCAGAGAGACTTCAACTGCATGTGTGCTGATAATAAGAGAAAGTTGGTAGAAAGCTTGTGGCAAGAACGGAGAGTTGTAAGAGATAGTGGAATACTACATCGGCTCAGTAAGGAACAGCTCAAGCTTCAAGAGCATCTGTATGAGGTCGTCACGTCTGAGCAGTCCTATCTTCAGGGCTTGGAGGTGGCTGTGGAGCATTTTCAGGAATCTTCAGTGCTGAAAGATGCTTTGGCACCAAGAGACAGAAAGTCATTGTTCTCTAGCATTGCTAAGATCAAAGAGATCAGTCAAAGCTTCATGGATGCAATGCTGTTGGAGCTGGCCTCAAGTGTGTTCTGCGACATAATCTGTGACGTTGTACACCAGTATGCTCTTGGACCCTTTGATGCTTATATAAATTACATCCGTAATATGCCCTATCAGGAGCAGACGTTACACAACCTCGGAAAAGAGAGTCCTCGGATTGTGGAGATCTTGCATAAACTACAGGAAGACCCTCGCTGCAGCCGCCTGCCCCTCAAATCTTTCCTTTCACTGCCATTTCAGAGAATCACACGGCTTAAAATCCTAATGGAGAACATCCAGAAGAAGGCCCTTCCAGGGTCAGACTGTGAGGCTTCATCATTGAGAGCTCTGACGGAGATCTCCAGGCTTCTAGAAGCTTGCAATTGGCAGGTGGGCAGAATGAAACAGATGGAAGAAATAGTGCAGATCGCTAACAAGATTGAGTTTGCATGCAAGgcCCTGCCTCTTGTTTCTTCTTCCCGCTGGCTTGTGAAGCAGGGAGATCTGGTGCAAATCTCTTTGAAGGAAAACATGTTTGGCCAGAGAAAACTGTGTCCAGTACTTCTGTTCCTCTTTAATGATCTGCTGCTAGTGGCAACCAGGAAAGGGTTGGATCGGTTTGTAGTTCATGACTACGTGCACCGCTCTCTGATAGAAGTGACCGAGGGCAAGGATctggaggaggagctggagggATACGAGCTCAACCGGACATTTAGGCTTGTTCTTTTGCATAACCACCGGAGCACCACCTCTCAACATCTACTGCAAACAAATTCAGAACGTCTTCATGTTTTCTTAGAACTGAGAAGGACTTGTGGGTGGAGCTCTTGAATGGGCGGAGACATGGACAGGATACTGTGTATGAAGAGTGGGGCACTGTGTCTAAGACTGTCCTCAGGTGCGATGTATAGAGGGGTACAGCGGACAACAACAAGGGGAGCTTAGTCTACAGCTGGGAGATGTGATTAACGTCATGCAGAAGACTTCAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65972 lncRNA upstream 8010 11993558 ~ 11994137 (+) True G44575
TU65963 lncRNA upstream 24736 11976827 ~ 11977411 (+) False G44574
TU65966 lncRNA upstream 25197 11937101 ~ 11976950 (+) True G44574
TU65960 lncRNA upstream 25197 11971581 ~ 11976950 (+) False G44574
XR_006251221.1 lncRNA upstream 296221 11689692 ~ 11705926 (+) True LOC122347449
TU65995 lncRNA downstream 77517 12087399 ~ 12092455 (+) True G44588
TU66023 lncRNA downstream 144440 12154322 ~ 12155432 (+) False scly
TU66030 lncRNA downstream 148180 12158062 ~ 12159895 (+) False scly
TU66049 lncRNA downstream 467242 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 467242 12477124 ~ 12482182 (+) False G44604
XM_043241253.1 mRNA upstream 200351 11791670 ~ 11801796 (+) True dzip1l
XM_043241254.1 mRNA upstream 201395 11791670 ~ 11800752 (+) False dzip1l
XM_043241804.1 mRNA upstream 554220 11442111 ~ 11447927 (+) False LOC122346915
XM_043241856.1 mRNA downstream 1213 12011095 ~ 12055010 (+) True farp2
XM_043241857.1 mRNA downstream 1213 12011095 ~ 12055010 (+) False farp2
XM_043241858.1 mRNA downstream 1213 12011095 ~ 12055010 (+) False farp2
XM_043241859.1 mRNA downstream 1213 12011095 ~ 12051787 (+) False farp2
XM_043241355.1 mRNA downstream 55416 12065298 ~ 12074564 (+) True boka
unassigned_transcript_1089 other upstream 29103 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 581817 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 581817 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 1128569 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1878713 10122753 ~ 10123434 (+) False atad5b
TU65993 other downstream 77517 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 756301 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 1070728 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 1098853 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1384347 13394229 ~ 13409912 (+) True G44887

Expression Profile